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splink
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public |
Fast, accurate and scalable probabilistic data linkage using your choice of SQL backend.
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2025-09-24 |
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r-mwcsr
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public |
Algorithms for solving various Maximum Weight Connected Subgraph Problems, including variants with budget constraints, cardinality constraints, weighted edges and signals. The package represents an R interface to high-efficient solvers based on relax-and-cut approach (Álvarez-Miranda E., Sinnl M. (2017) <doi:10.1016/j.cor.2017.05.015>) mixed-integer programming (Loboda A., Artyomov M., and Sergushichev A. (2016) <doi:10.1007/978-3-319-43681-4_17>) and simulated annealing.
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2025-09-24 |
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r-gpg
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public |
Bindings to GnuPG for working with OpenGPG (RFC4880) cryptographic methods. Includes utilities for public key encryption, creating and verifying digital signatures, and managing your local keyring. Some functionality depends on the version of GnuPG that is installed on the system. On Windows this package can be used together with 'GPG4Win' which provides a GUI for managing keys and entering passphrases.
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2025-09-24 |
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llama-index-core
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public |
Interface between LLMs and your data
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2025-09-24 |
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r-slidecna
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public |
This takes spatial single-cell-type RNA-seq data (specifically designed for Slide-seq v2) that calls copy number alterations (CNAs) using pseudo-spatial binning, clusters cellular units (e.g. beads) based on CNA profile, and visualizes spatial CNA patterns. Documentation about 'SlideCNA' is included in the the pre-print by Zhang et al. (2022, <doi:10.1101/2022.11.25.517982>). The package 'enrichR' (>= 3.0), conditionally used to annotate SlideCNA-determined clusters with gene ontology terms, can be installed at <https://github.com/wjawaid/enrichR> or with install_github("wjawaid/enrichR").
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2025-09-24 |
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logfire
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public |
The best Python observability tool! 🪵🔥
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2025-09-24 |
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r-pkggraphr
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public |
It is often useful when developing an R package to track the relationship between functions in order to appropriately test and track changes. This package generates a graph of the relationship between all R functions in a package. It can also be used on any directory containing .R files which can be very useful for 'shiny' apps or other non-package workflows.
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2025-09-24 |
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atlasopenmagic
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public |
A utility package for retrieving ATLAS open data URLs and metadata.
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2025-09-24 |
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reportgenerator
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public |
ReportGenerator converts coverage reports generated by coverlet, OpenCover, dotCover, Visual Studio, NCover, Cobertura, JaCoCo, Clover, gcov or lcov into human readable reports in various formats.
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2025-09-24 |
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jupyterlite-pyodide-kernel
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public |
Python kernel for JupyterLite powered by Pyodide
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2025-09-24 |
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r-tesseract
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public |
Bindings to 'Tesseract' (https://opensource.google.com/projects/tesseract): a powerful optical character recognition (OCR) engine that supports over 100 languages. The engine is highly configurable in order to tune the detection algorithms and obtain the best possible results.
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2025-09-24 |
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r-oro.nifti
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public |
Functions for the input/output and visualization of medical imaging data that follow
either the 'ANALYZE', 'NIfTI' or 'AFNI' formats. This package is part of the Rigorous
Analytics bundle.
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2025-09-24 |
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r-tractor.base
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public |
Functions for working with magnetic resonance images. Reading and writing of popular file formats (DICOM, Analyze, NIfTI-1, NIfTI-2, MGH); interactive and non-interactive visualisation; flexible image manipulation; metadata and sparse image handling.
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2025-09-24 |
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r-distrex
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public |
Extends package 'distr' by functionals, distances, and conditional distributions.
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2025-09-24 |
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r-noisefiltersr
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public |
An extensive implementation of state-of-the-art and classical algorithms to preprocess label noise in classification problems.
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2025-09-24 |
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r-specr
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public |
Provides utilities for conducting specification curve analyses (Simonsohn, Simmons & Nelson (2020, <doi: 10.1038/s41562-020-0912-z>) or multiverse analyses (Steegen, Tuerlinckx, Gelman & Vanpaemel, 2016, <doi: 10.1177/1745691616658637>) including functions to setup, run, evaluate, and plot all specifications.
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2025-09-24 |
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r-treemap
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public |
A treemap is a space-filling visualization of hierarchical structures. This package offers great flexibility to draw treemaps.
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2025-09-24 |
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r-forestfloor
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public |
Form visualizations of high dimensional mapping structures of random forests and feature contributions.
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2025-09-24 |
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r-mqtl
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public |
mQTL provides a complete QTL analysis pipeline for metabolomic data. Distinctive features include normalisation using PQN approach, peak alignment using RSPA approach, dimensionality reduction using SRV approach and finally QTL mapping using R/qtl package.
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2025-09-24 |
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r-fake
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public |
This R package can be used to generate artificial data conditionally on pre-specified (simulated or user-defined) relationships between the variables and/or observations. Each observation is drawn from a multivariate Normal distribution where the mean vector and covariance matrix reflect the desired relationships. Outputs can be used to evaluate the performances of variable selection, graphical modelling, or clustering approaches by comparing the true and estimated structures (B Bodinier et al (2021) <arXiv:2106.02521>).
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2025-09-24 |
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r-scholar
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public |
Provides functions to extract citation data from Google Scholar. Convenience functions are also provided for comparing multiple scholars and predicting future h-index values.
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2025-09-24 |
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r-collapsibletree
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public |
Interactive Reingold-Tilford tree diagrams created using 'D3.js', where every node can be expanded and collapsed by clicking on it. Tooltips and color gradients can be mapped to nodes using a numeric column in the source data frame. See 'collapsibleTree' website for more information and examples.
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2025-09-24 |
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r-vtree
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public |
A tool for calculating and drawing "variable trees". Variable trees display information about nested subsets of a data frame.
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2025-09-24 |
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r-tidyseurat
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public |
It creates an invisible layer that allow to see the 'Seurat' object as tibble and interact seamlessly with the tidyverse.
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2025-09-24 |
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r-webchem
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public |
Chemical information from around the web. This package interacts with a suite of web services for chemical information. Sources include: Alan Wood's Compendium of Pesticide Common Names, Chemical Identifier Resolver, ChEBI, Chemical Translation Service, ChemIDplus, ChemSpider, ETOX, Flavornet, NIST Chemistry WebBook, OPSIN, PAN Pesticide Database, PubChem, SRS, Wikidata.
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2025-09-24 |
