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pygnssutils
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public |
Python GNSS CLI utility library.
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2025-10-07 |
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r-bipartite
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public |
Functions to visualise webs and calculate a series of indices commonly used to describe pattern in (ecological) webs. It focuses on webs consisting of only two levels (bipartite), e.g. pollination webs or predator-prey-webs. Visualisation is important to get an idea of what we are actually looking at, while the indices summarise different aspects of the web's topology.
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2025-10-07 |
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xaitk-saliency
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public |
Visual saliency map generation interfaces and baseline implementations for explainable AI.
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2025-10-07 |
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sentinelhub
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public |
Sentinel Hub Utilities
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2025-10-07 |
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eccodes
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public |
ECMWF ecCodes Copyright 2005- ECMWF.
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2025-10-07 |
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rattler-build-conda-compat
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public |
rattler-build module which offer compatibility with conda-smithy
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2025-10-07 |
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python-duckdb
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public |
An Embeddable Analytical Database
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2025-10-07 |
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faker
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public |
Faker is a Python package that generates fake data for you
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2025-10-07 |
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pymdi
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public |
A library that enables code interoperability via the MolSSI Driver Interface.
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2025-10-07 |
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ligotimegps
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public |
A pure-python version of lal.LIGOTimeGPS
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2025-10-07 |
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calibrated-explanations
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public |
Extract calibrated explanations from machine learning models.
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2025-10-07 |
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r-smartsnp
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public |
Fast computation of multivariate analyses of small (10s to 100s markers) to big (1000s to 100000s) genotype data. Runs Principal Component Analysis allowing for centering, z-score standardization and scaling for genetic drift, projection of ancient samples to modern genetic space and multivariate tests for differences in group location (Permutation-Based Multivariate Analysis of Variance) and dispersion (Permutation-Based Multivariate Analysis of Dispersion).
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2025-10-07 |
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duckdb
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public |
An Embeddable Analytical Database
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2025-10-07 |
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highfive
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public |
Header-only C++ HDF5 interface
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2025-10-07 |
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tiledb-py
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public |
Python interface to the TileDB sparse and dense multi-dimensional array storage manager
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2025-10-07 |
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r-spectrum
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public |
A self-tuning spectral clustering method for single or multi-view data. 'Spectrum' uses a new type of adaptive density aware kernel that strengthens connections in the graph based on common nearest neighbours. It uses a tensor product graph data integration and diffusion procedure to integrate different data sources and reduce noise. 'Spectrum' uses either the eigengap or multimodality gap heuristics to determine the number of clusters. The method is sufficiently flexible so that a wide range of Gaussian and non-Gaussian structures can be clustered with automatic selection of K.
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2025-10-07 |
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r-smoothwin
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public |
The main function in the package utilizes a windowing function in the form of an exponential weighting function to linear models. The bandwidth and sharpness of the window are controlled by two parameters. Then, a series of tests are used to identify the right parameters of the window (see Hamed Haselimashhadi et al (2019) <https://www.biorxiv.org/content/10.1101/656678v1>).
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2025-10-07 |
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spyder-notebook
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public |
Jupyter notebook integration with Spyder
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2025-10-07 |
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libptscotch
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public |
PT-SCOTCH: (Parallel) Static Mapping, Graph, Mesh and Hypergraph Partitioning, and Parallel and Sequential Sparse Matrix Ordering Package
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2025-10-07 |
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ptscotch
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public |
PT-SCOTCH: (Parallel) Static Mapping, Graph, Mesh and Hypergraph Partitioning, and Parallel and Sequential Sparse Matrix Ordering Package
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2025-10-07 |
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libscotch
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public |
SCOTCH: Static Mapping, Graph, Mesh and Hypergraph Partitioning, and Parallel and Sequential Sparse Matrix Ordering Package
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2025-10-07 |
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scotch
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public |
SCOTCH: Static Mapping, Graph, Mesh and Hypergraph Partitioning, and Parallel and Sequential Sparse Matrix Ordering Package
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2025-10-07 |
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r-metaplus
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public |
Performs meta-analysis and meta-regression using standard and robust methods with confidence intervals based on the profile likelihood. Robust methods are based on alternative distributions for the random effect, either the t-distribution (Lee and Thompson, 2008 <doi:10.1002/sim.2897> or Baker and Jackson, 2008 <doi:10.1007/s10729-007-9041-8>) or mixtures of normals (Beath, 2014 <doi:10.1002/jrsm.1114>).
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2025-10-07 |
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r-wto
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public |
Computes the Weighted Topological Overlap with positive and negative signs (wTO) networks given a data frame containing the mRNA count/ expression/ abundance per sample, and a vector containing the interested nodes of interaction (a subset of the elements of the full data frame). It also computes the cut-off threshold or p-value based on the individuals bootstrap or the values reshuffle per individual. It also allows the construction of a consensus network, based on multiple wTO networks. The package includes a visualization tool for the networks. More about the methodology can be found at <arXiv:1711.04702>.
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2025-10-07 |
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pertpy
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public |
Perturbation Analysis in the scverse ecosystem.
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2025-10-07 |
