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tiledb-py
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public |
Python interface to the TileDB sparse and dense multi-dimensional array storage manager
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2025-10-07 |
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r-spectrum
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public |
A self-tuning spectral clustering method for single or multi-view data. 'Spectrum' uses a new type of adaptive density aware kernel that strengthens connections in the graph based on common nearest neighbours. It uses a tensor product graph data integration and diffusion procedure to integrate different data sources and reduce noise. 'Spectrum' uses either the eigengap or multimodality gap heuristics to determine the number of clusters. The method is sufficiently flexible so that a wide range of Gaussian and non-Gaussian structures can be clustered with automatic selection of K.
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2025-10-07 |
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r-smoothwin
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public |
The main function in the package utilizes a windowing function in the form of an exponential weighting function to linear models. The bandwidth and sharpness of the window are controlled by two parameters. Then, a series of tests are used to identify the right parameters of the window (see Hamed Haselimashhadi et al (2019) <https://www.biorxiv.org/content/10.1101/656678v1>).
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2025-10-07 |
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spyder-notebook
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public |
Jupyter notebook integration with Spyder
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2025-10-07 |
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libptscotch
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public |
PT-SCOTCH: (Parallel) Static Mapping, Graph, Mesh and Hypergraph Partitioning, and Parallel and Sequential Sparse Matrix Ordering Package
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2025-10-07 |
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ptscotch
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public |
PT-SCOTCH: (Parallel) Static Mapping, Graph, Mesh and Hypergraph Partitioning, and Parallel and Sequential Sparse Matrix Ordering Package
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2025-10-07 |
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libscotch
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public |
SCOTCH: Static Mapping, Graph, Mesh and Hypergraph Partitioning, and Parallel and Sequential Sparse Matrix Ordering Package
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2025-10-07 |
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scotch
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public |
SCOTCH: Static Mapping, Graph, Mesh and Hypergraph Partitioning, and Parallel and Sequential Sparse Matrix Ordering Package
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2025-10-07 |
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r-metaplus
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public |
Performs meta-analysis and meta-regression using standard and robust methods with confidence intervals based on the profile likelihood. Robust methods are based on alternative distributions for the random effect, either the t-distribution (Lee and Thompson, 2008 <doi:10.1002/sim.2897> or Baker and Jackson, 2008 <doi:10.1007/s10729-007-9041-8>) or mixtures of normals (Beath, 2014 <doi:10.1002/jrsm.1114>).
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2025-10-07 |
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r-wto
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public |
Computes the Weighted Topological Overlap with positive and negative signs (wTO) networks given a data frame containing the mRNA count/ expression/ abundance per sample, and a vector containing the interested nodes of interaction (a subset of the elements of the full data frame). It also computes the cut-off threshold or p-value based on the individuals bootstrap or the values reshuffle per individual. It also allows the construction of a consensus network, based on multiple wTO networks. The package includes a visualization tool for the networks. More about the methodology can be found at <arXiv:1711.04702>.
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2025-10-07 |
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pertpy
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public |
Perturbation Analysis in the scverse ecosystem.
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2025-10-07 |
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mpi4jax
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public |
MPI support for JAX
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2025-10-07 |
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r-runonce
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public |
Package 'runonce' helps automating the saving of long-running code to help running the same code multiple times. If you run some long-running code once, it saves the result in a file on disk. Then, if the result already exists, i.e. if the code has already been run and its output has already been saved, it just reads the result from the stored file instead of running the code again.
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2025-10-07 |
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google-cloud-sdk
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public |
Command-line interface for Google Cloud Platform products and services
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2025-10-07 |
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stsynphot
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public |
Synthetic photometry for HST/JWST
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2025-10-07 |
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pcst-fast
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public |
A fast implementation of the Goemans-Williamson scheme for the PCST (prize-collecting Steiner tree/forest) problem.
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2025-10-07 |
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dbus-fast
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public |
A faster version of dbus-next
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2025-10-07 |
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deid
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public |
best effort anonymization for dicom images with Python
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2025-10-07 |
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ark
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public |
Ark, an R kernel
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2025-10-07 |
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pyfive
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public |
A pure Python HDF5 file reader
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2025-10-07 |
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pyiron_atomistics
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public |
pyiron - an integrated development environment (IDE) for computational materials science.
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2025-10-07 |
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ansys-tools-visualization-interface
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public |
A Python visualization interface for PyAnsys libraries
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2025-10-07 |
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smqtk-classifier
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public |
Algorithms, data structures and utilities around performing classification of inputs.
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2025-10-07 |
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pydantic-partial
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public |
Create partial models from your pydantic models. Partial models may allow None for certain or all fields.
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2025-10-07 |
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pytsql
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public |
pytsql allows to run mssql scripts, typically run via GUIs, via CLI.
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2025-10-07 |
