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r-dtwclust
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public |
Time series clustering along with optimized techniques related to the Dynamic Time Warping distance and its corresponding lower bounds. Implementations of partitional, hierarchical, fuzzy, k-Shape and TADPole clustering are available. Functionality can be easily extended with custom distance measures and centroid definitions. Implementations of DTW barycenter averaging, a distance based on global alignment kernels, and the soft-DTW distance and centroid routines are also provided. All included distance functions have custom loops optimized for the calculation of cross-distance matrices, including parallelization support. Several cluster validity indices are included.
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2025-09-30 |
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r-grab
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public |
Provides a comprehensive suite of genome-wide association study (GWAS) methods specifically designed for biobank-scale data. The package offers computationally efficient and robust association tests for time-to-event traits (e.g., Bi et al., 2020 <doi:10.1016/j.ajhg.2020.06.003>), ordinal categorical traits (e.g., Bi et al., 2021 <doi:10.1016/j.ajhg.2021.03.019>), and longitudinal traits (Xu et al., 2025 <doi:10.1038/s41467-025-56669-1>). Additionally, it includes functions for simulating genotype and phenotype data to support research and method development.
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2025-09-30 |
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pysqa
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public |
pysqa - simple queue adapter
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2025-09-30 |
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r-paralleldist
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public |
A fast parallelized alternative to R's native 'dist' function to calculate distance matrices for continuous, binary, and multi-dimensional input matrices, which supports a broad variety of 41 predefined distance functions from the 'stats', 'proxy' and 'dtw' R packages, as well as user- defined functions written in C++. For ease of use, the 'parDist' function extends the signature of the 'dist' function and uses the same parameter naming conventions as distance methods of existing R packages. The package is mainly implemented in C++ and leverages the 'RcppParallel' package to parallelize the distance computations with the help of the 'TinyThread' library. Furthermore, the 'Armadillo' linear algebra library is used for optimized matrix operations during distance calculations. The curiously recurring template pattern (CRTP) technique is applied to avoid virtual functions, which improves the Dynamic Time Warping calculations while the implementation stays flexible enough to support different DTW step patterns and normalization methods.
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2025-09-30 |
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r-lamw
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public |
Implements both real-valued branches of the Lambert-W function (Corless et al, 1996) <doi:10.1007/BF02124750> without the need for installing the entire GSL.
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2025-09-30 |
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nanovdb
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public |
OpenVDB - Sparse volume data structure and tools
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2025-09-30 |
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alfasim-sdk
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public |
ALFAsim API/SDK
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2025-09-30 |
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hepunits
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public |
Units and constants in the HEP system of units
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2025-09-30 |
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r-openssl
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public |
Bindings to OpenSSL libssl and libcrypto, plus custom SSH key parsers. Supports RSA, DSA and EC curves P-256, P-384, P-521, and curve25519. Cryptographic signatures can either be created and verified manually or via x509 certificates. AES can be used in cbc, ctr or gcm mode for symmetric encryption; RSA for asymmetric (public key) encryption or EC for Diffie Hellman. High-level envelope functions combine RSA and AES for encrypting arbitrary sized data. Other utilities include key generators, hash functions (md5, sha1, sha256, etc), base64 encoder, a secure random number generator, and 'bignum' math methods for manually performing crypto calculations on large multibyte integers.
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2025-09-30 |
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pyfileindex
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public |
pyfileindex - pythonic file system index
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2025-09-30 |
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h5io_browser
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public |
Easy navigation and data storage for HDF5
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2025-09-30 |
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pyiron_atomistics
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public |
pyiron - an integrated development environment (IDE) for computational materials science.
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2025-09-30 |
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r-cpprouting
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public |
Calculation of distances, shortest paths and isochrones on weighted graphs using several variants of Dijkstra algorithm. Proposed algorithms are unidirectional Dijkstra (Dijkstra, E. W. (1959) <doi:10.1007/BF01386390>), bidirectional Dijkstra (Goldberg, Andrew & Fonseca F. Werneck, Renato (2005) <https://archive.siam.org/meetings/alenex05/papers/03agoldberg.pdf>), A* search (P. E. Hart, N. J. Nilsson et B. Raphael (1968) <doi:10.1109/TSSC.1968.300136>), new bidirectional A* (Pijls & Post (2009) <https://repub.eur.nl/pub/16100/ei2009-10.pdf>), Contraction hierarchies (R. Geisberger, P. Sanders, D. Schultes and D. Delling (2008) <doi:10.1007/978-3-540-68552-4_24>), PHAST (D. Delling, A.Goldberg, A. Nowatzyk, R. Werneck (2011) <doi:10.1016/j.jpdc.2012.02.007>). Algorithms for solving the traffic assignment problem are All-or-Nothing assignment, Method of Successive Averages, Frank-Wolfe algorithm (M. Fukushima (1984) <doi:10.1016/0191-2615(84)90029-8>), Conjugate and Bi-Conjugate Frank-Wolfe algorithms (M. Mitradjieva, P. O. Lindberg (2012) <doi:10.1287/trsc.1120.0409>), Algorithm-B (R. B. Dial (2006) <doi:10.1016/j.trb.2006.02.008>).
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2025-09-30 |
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memory_graph
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public |
Visualize Python data using Graphviz.
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2025-09-30 |
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pyddx
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public |
ddx continuum solvation library
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2025-09-30 |
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port-for
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public |
port-for is a command-line utility and a python library that helps with local TCP ports managment
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2025-09-30 |
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improver
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public |
IMPROVER is a library of algorithms for meteorological post-processing and verification.
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2025-09-30 |
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dyno
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public |
A simple library for solving dynamic stochastic economic models.
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2025-09-30 |
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bmad
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public |
Bmad is an object oriented, open source, subroutine library for relativistic charged-particle dynamics simulations in accelerators and storage rings.
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2025-09-30 |
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r-rpref
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public |
Routines to select and visualize the maxima for a given strict partial order. This especially includes the computation of the Pareto frontier, also known as (Top-k) Skyline operator (see Börzsönyi, et al. (2001) <doi:10.1109/ICDE.2001.914855>), and some generalizations known as database preferences (see Kießling (2002) <doi:10.1016/B978-155860869-6/50035-4>).
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2025-09-30 |
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libzeep
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public |
C++ library for reading and writing XML and creating web, REST and SOAP servers.
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2025-09-30 |
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azure-monitor-query
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public |
Microsoft Azure Monitor Query Client Library for Python
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2025-09-30 |
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neo4j-python-driver
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public |
Neo4j Bolt driver for Python
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2025-09-30 |
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hyfetch
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public |
Command-line tool that presents system info with LGBTQ+ pride flags
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2025-09-30 |
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dialectid
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public |
Computational models for dialect identification.
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2025-09-30 |
