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r-genabel
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public |
a package for genome-wide association analysis between quantitative or binary traits and single-nucleotide polymorphisms (SNPs).
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2025-04-22 |
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r-drc
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public |
Analysis of dose-response data is made available through a suite of flexible and versatile
model fitting and after-fitting functions.
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2025-04-22 |
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r-dmt
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public |
Probabilistic dependency modeling toolkit.
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2025-04-22 |
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r-taxize
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public |
Interacts with a suite of web 'APIs' for taxonomic tasks, such as getting database specific taxonomic identifiers, verifying species names, getting taxonomic hierarchies, fetching downstream and upstream taxonomic names, getting taxonomic synonyms, converting scientific to common names and vice versa, and more.
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2025-04-22 |
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r-wikitaxa
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public |
'Taxonomic' information from 'Wikipedia', 'Wikicommons', 'Wikispecies', and 'Wikidata'. Functions included for getting taxonomic information from each of the sources just listed, as well performing taxonomic search.
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2025-04-22 |
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r-wikidatar
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public |
An API client for the Wikidata <https://www.wikidata.org/wiki/Wikidata:Main_Page> store of semantic data.
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2025-04-22 |
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r-wikipedir
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public |
A wrapper for the MediaWiki API, aimed particularly at the Wikimedia 'production' wikis, such as Wikipedia. It can be used to retrieve page text, information about users or the history of pages, and elements of the category tree.
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2025-04-22 |
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r-ritis
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public |
An interface to the Integrated Taxonomic Information System ('ITIS') (<https://www.itis.gov>). Includes functions to work with the 'ITIS' REST API methods (<https://www.itis.gov/ws_description.html>), as well as the 'Solr' web service (<https://www.itis.gov/solr_documentation.html>).
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2025-04-22 |
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r-rastervis
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public |
Methods for enhanced visualization and interaction with raster data. It implements visualization methods for quantitative data and categorical data, both for univariate and multivariate rasters. It also provides methods to display spatiotemporal rasters, and vector fields. See the website for examples.
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2025-04-22 |
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r-osmar
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public |
This package provides infrastructure to access OpenStreetMap data from different sources, to work with the data in common R manner, and to convert data into available infrastructure provided by existing R packages (e.g., into sp and igraph objects).
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2025-04-22 |
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r-natserv
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public |
Interface to 'NatureServe' (<http://www.natureserve.org>). Includes methods to get data, image metadata, search taxonomic names, and make maps.
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2025-04-22 |
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r-bold
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public |
A programmatic interface to the Web Service methods provided by Bold Systems (<http://www.boldsystems.org/>) for genetic 'barcode' data. Functions include methods for searching by sequences by taxonomic names, ids, collectors, and institutions; as well as a function for searching for specimens, and downloading trace files.
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2025-04-22 |
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r-solrium
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public |
Provides a set of functions for querying and parsing data from 'Solr' (<https://lucene.apache.org/solr>) 'endpoints' (local and remote), including search, 'faceting', 'highlighting', 'stats', and 'more like this'. In addition, some functionality is included for creating, deleting, and updating documents in a 'Solr' 'database'.
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2025-04-22 |
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r-worrms
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public |
Client for World Register of Marine Species (<http://www.marinespecies.org/>). Includes functions for each of the API methods, including searching for names by name, date and common names, searching using external identifiers, fetching synonyms, as well as fetching taxonomic children and taxonomic classification.
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2025-04-22 |
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r-httpcode
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public |
Find and explain the meaning of 'HTTP' status codes. Functions included for searching for codes by full or partial number, by message, and get appropriate dog and cat images for many status codes.
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2025-04-22 |
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r-rotl
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public |
An interface to the 'Open Tree of Life' API to retrieve phylogenetic trees, information about studies used to assemble the synthetic tree, and utilities to match taxonomic names to 'Open Tree identifiers'. The 'Open Tree of Life' aims at assembling a comprehensive phylogenetic tree for all named species.
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2025-04-22 |
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r-rncl
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public |
An interface to the Nexus Class Library which allows parsing of NEXUS, Newick and other phylogenetic tree file formats. It provides elements of the file that can be used to build phylogenetic objects such as ape's 'phylo' or phylobase's 'phylo4(d)'. This functionality is demonstrated with 'read_newick_phylo()' and 'read_nexus_phylo()'.
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2025-04-22 |
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monkeytype
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public |
Generating type annotations from sampled production types
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2025-04-22 |
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giza
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public |
A drop-in replacement for PGPLOT using C and Cairo.
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2025-04-22 |
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pytest-smartcov
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public |
Smart coverage measurement for py.test.
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2025-04-22 |
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r-randomfields
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public |
Methods for the inference on and the simulation of Gaussian fields are provided, as well as methods for the simulation of extreme value random fields.
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2025-04-22 |
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r-webshot
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public |
Takes screenshots of web pages, including Shiny applications and R Markdown documents.
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2025-04-22 |
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r-settings
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public |
Provides option settings management that goes beyond R's default 'options' function. With this package, users can define their own option settings manager holding option names, default values and (if so desired) ranges or sets of allowed option values that will be automatically checked. Settings can then be retrieved, altered and reset to defaults with ease. For R programmers and package developers it offers cloning and merging functionality which allows for conveniently defining global and local options, possibly in a multilevel options hierarchy. See the package vignette for some examples concerning functions, S4 classes, and reference classes. There are convenience functions to reset par() and options() to their 'factory defaults'.
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2025-04-22 |
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r-randomfieldsutils
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public |
Various utilities are provided that might be used in spatial statistics and elsewhere. It delivers a method for solving linear equations that checks the sparsity of the matrix before any algorithm is used. Furthermore, it includes the Struve functions.
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2025-04-22 |
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r-processx
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public |
Tools to run system processes in the background. It can check if a background process is running; wait on a background process to finish; get the exit status of finished processes; kill background processes. It can read the standard output and error of the processes, using non-blocking connections. 'processx' can poll a process for standard output or error, with a timeout. It can also poll several processes at once.
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2025-04-22 |
