Package Name | Access | Summary | Updated |
---|---|---|---|

r-autoplotly | public | Functionalities to automatically generate interactive visualizations for popular statistical results supported by 'ggfortify', such as time series, PCA, clustering and survival analysis, with 'plotly.js' <https://plot.ly/> and 'ggplot2' style. The generated visualizations can also be easily extended using 'ggplot2' and 'plotly' syntax while staying interactive. | 2019-07-21 |

r-autoshiny | public | Static code compilation of a 'shiny' app given an R function (into 'ui.R' and 'server.R' files or into a 'shiny' app object). See examples at <https://github.com/alekrutkowski/autoshiny>. | 2019-07-21 |

r-barcoder | public | Tools to generate unique identifiers and printable barcoded labels for sample management. The creation of unique ID codes and printable PDF files can be initiated by standard commands, user prompts, or through a GUI addin for R Studio. Both single-level and hierarchical labels can be created in the command line interactively or non-interactively. | 2019-07-21 |

r-aws.ec2metadata | public | Retrieve Amazon EC2 instance metadata from within the running instance. | 2019-07-21 |

r-batchjobs | public | Provides Map, Reduce and Filter variants to generate jobs on batch computing systems like PBS/Torque, LSF, SLURM and Sun Grid Engine. Multicore and SSH systems are also supported. For further details see the project web page. | 2019-07-21 |

r-baseline | public | Collection of baseline correction algorithms, along with a framework and a GUI for optimising baseline algorithm parameters. Typical use of the package is for removing background effects from spectra originating from various types of spectroscopy and spectrometry, possibly optimizing this with regard to regression or classification results. Correction methods include polynomial fitting, weighted local smoothers and many more. | 2019-07-21 |

r-batch | public | Functions to allow you to easily pass command-line arguments into R, and functions to aid in submitting your R code in parallel on a cluster and joining the results afterward (e.g. multiple parameter values for simulations running in parallel, splitting up a permutation test in parallel, etc.). See `parseCommandArgs(...)' for the main example of how to use this package. | 2019-07-21 |

r-bgmm | public | Two partially supervised mixture modeling methods: soft-label and belief-based modeling are implemented. For completeness, we equipped the package also with the functionality of unsupervised, semi- and fully supervised mixture modeling. The package can be applied also to selection of the best-fitting from a set of models with different component numbers or constraints on their structures. For detailed introduction see: Przemyslaw Biecek, Ewa Szczurek, Martin Vingron, Jerzy Tiuryn (2012), The R Package bgmm: Mixture Modeling with Uncertain Knowledge, Journal of Statistical Software <doi:10.18637/jss.v047.i03>. | 2019-07-21 |

r-betareg | public | Beta regression for modeling beta-distributed dependent variables, e.g., rates and proportions. In addition to maximum likelihood regression (for both mean and precision of a beta-distributed response), bias-corrected and bias-reduced estimation as well as finite mixture models and recursive partitioning for beta regressions are provided. | 2019-07-21 |

r-bigstep | public | Selecting linear and generalized linear models for large data sets using modified stepwise procedure and modern selection criteria (like modifications of Bayesian Information Criterion). Selection can be performed on data which exceed RAM capacity. | 2019-07-21 |

r-binhf | public | Binomial Haar-Fisz transforms for Gaussianization | 2019-07-21 |

r-biocmanager | public | A convenient tool to install and update Bioconductor packages. | 2019-07-21 |

r-biomark | public | Variable selection methods are provided for several classification methods | 2019-07-21 |

r-ccapp | public | Canonical correlation analysis and maximum correlation via projection pursuit, as well as fast implementations of correlation estimators, with a focus on robust and non-parametric methods. | 2019-07-21 |

r-clues | public | We developed the clues R package to provide functions for automatically estimating the number of clusters and getting the final cluster partition without any input parameter except the stopping rule for convergence. The package also provides functions to evaluate and compare the performances of partitions of a data set both numerically and graphically. | 2019-07-21 |

r-circular | public | Circular Statistics, from "Topics in circular Statistics" (2001) S. Rao Jammalamadaka and A. SenGupta, World Scientific. | 2019-07-21 |

r-cghflasso | public | Spatial smoothing and hot spot detection using the fused lasso regression | 2019-07-21 |

r-blockmodeling | public | This is primarily meant as an implementation of generalized blockmodeling for valued networks. In addition, measures of similarity or dissimilarity based on structural equivalence and regular equivalence (REGE algorithms) can be computed and partitioned matrices can be plotted: Žiberna (2007)<doi:10.1016/j.socnet.2006.04.002>, Žiberna (2008)<doi:10.1080/00222500701790207>, Žiberna (2014)<doi:10.1016/j.socnet.2014.04.002>. | 2019-07-21 |

r-boolnet | public | Provides methods to reconstruct and generate synchronous, asynchronous, probabilistic and temporal Boolean networks, and to analyze and visualize attractors in Boolean networks. | 2019-07-21 |

r-cairo | public | R graphics device using cairographics library that can be used to create high-quality vector (PDF, PostScript and SVG) and bitmap output (PNG,JPEG,TIFF), and high-quality rendering in displays (X11 and Win32). Since it uses the same back-end for all output, copying across formats is WYSIWYG. Files are created without the dependence on X11 or other external programs. This device supports alpha channel (semi-transparent drawing) and resulting images can contain transparent and semi-transparent regions. It is ideal for use in server environments (file output) and as a replacement for other devices that don't have Cairo's capabilities such as alpha support or anti-aliasing. Backends are modular such that any subset of backends is supported. | 2019-07-21 |

r-bma | public | Package for Bayesian model averaging and variable selection for linear models, generalized linear models and survival models (cox regression). | 2019-07-21 |

r-bootstrap | public | Software (bootstrap, cross-validation, jackknife) and data for the book "An Introduction to the Bootstrap" by B. Efron and R. Tibshirani, 1993, Chapman and Hall. This package is primarily provided for projects already based on it, and for support of the book. New projects should preferentially use the recommended package "boot". | 2019-07-21 |

r-compute.es | public | This package contains several functions for calculating the most widely used effect sizes (ES), along with their variances, confidence intervals and p-values. The output includes ES's of d (mean difference), g (unbiased estimate of d), r (correlation coefficient), z' (Fisher's z), and OR (odds ratio and log odds ratio). In addition, NNT (number needed to treat), U3, CLES (Common Language Effect Size) and Cliff's Delta are computed. This package uses recommended formulas as described in The Handbook of Research Synthesis and Meta-Analysis (Cooper, Hedges, & Valentine, 2009). | 2019-07-21 |

r-colortools | public | R package with handy functions to help users select and play with color schemes in an HSV color model | 2019-07-21 |

r-cnogpro | public | Methods for assigning copy number states and breakpoints in resequencing experiments of prokaryotic organisms. | 2019-07-21 |

r-castor | public | Efficient phylogenetic analyses on massive phylogenies comprising up to millions of tips. Functions include pruning, rerooting, calculation of most-recent common ancestors, calculating distances from the tree root and calculating pairwise distances. Calculation of phylogenetic signal and mean trait depth (trait conservatism), ancestral state reconstruction and hidden character prediction of discrete characters, simulating and fitting models of trait evolution, fitting and simulating diversification models, dating trees, comparing trees, and reading/writing trees in Newick format. Citation: Louca, Stilianos and Doebeli, Michael (2017) <doi:10.1093/bioinformatics/btx701>. | 2019-07-21 |

r-checkpoint | public | The goal of checkpoint is to solve the problem of package reproducibility in R. Specifically, checkpoint allows you to install packages as they existed on CRAN on a specific snapshot date as if you had a CRAN time machine. To achieve reproducibility, the checkpoint() function installs the packages required or called by your project and scripts to a local library exactly as they existed at the specified point in time. Only those packages are available to your project, thereby avoiding any package updates that came later and may have altered your results. In this way, anyone using checkpoint's checkpoint() can ensure the reproducibility of your scripts or projects at any time. To create the snapshot archives, once a day (at midnight UTC) Microsoft refreshes the Austria CRAN mirror on the "Microsoft R Archived Network" server (<https://mran.microsoft.com/>). Immediately after completion of the rsync mirror process, the process takes a snapshot, thus creating the archive. Snapshot archives exist starting from 2014-09-17. | 2019-07-21 |

r-ccremover | public | Implements a method for identifying and removing the cell-cycle effect from scRNA-Seq data. The description of the method is in Barron M. and Li J. (2016) <doi | 2019-07-21 |

r-calibrate | public | Package for drawing calibrated scales with tick marks on (non-orthogonal) variable vectors in scatterplots and biplots. | 2019-07-21 |

r-caroline | public | The caroline R library contains dozens of functions useful for: database migration (dbWriteTable2), database style joins & aggregation (nerge, groupBy & bestBy), data structure conversion (nv, tab2df), legend table making (sstable & leghead), plot annotation (labsegs & mvlabs), data visualization (violins, pies & raPlot), character string manipulation (m & pad), file I/O (write.delim), batch scripting and more. The package's greatest contributions lie in the database style merge, aggregation and interface functions as well as in it's extensive use and propagation of row, column and vector names in most functions. | 2019-07-21 |

r-biwt | public | Compute multivariate location, scale, and correlation estimates based on Tukey's biweight M-estimator. | 2019-07-21 |

r-catnet | public | Structure learning and parameter estimation of discrete Bayesian networks using likelihood-based criteria. Exhaustive search for fixed node orders and stochastic search of optimal orders via simulated annealing algorithm are implemented. | 2019-07-21 |

r-cba | public | Implements clustering techniques such as Proximus and Rock, utility functions for efficient computation of cross distances and data manipulation. | 2019-07-21 |

r-bioset | public | Functions to help dealing with raw data from measurements, like reading and transforming raw values organized in matrices, calculating and converting concentrations and calculating precision of duplicates / triplicates / ... . It is compatible with and building on top of some 'tidyverse'-packages. | 2019-07-21 |

r-bpca | public | Implements biplot (2d and 3d) of multivariate data based on principal components analysis and diagnostic tools of the quality of the reduction. | 2019-07-21 |

r-boruta | public | An all relevant feature selection wrapper algorithm. It finds relevant features by comparing original attributes importance with importance achievable at random, estimated using their permuted copies (shadows). | 2019-07-21 |

r-bs4dash | public | Make 'Bootstrap 4' dashboards. Use the full power of 'AdminLTE3', a dashboard template built on top of 'Bootstrap 4' <https://github.com/almasaeed2010/AdminLTE/tree/v3-dev>. | 2019-07-21 |

r-bradleyterry2 | public | Specify and fit the Bradley-Terry model, including structured versions in which the parameters are related to explanatory variables through a linear predictor and versions with contest-specific effects, such as a home advantage. | 2019-07-21 |

r-c3net | public | This package allows inferring gene regulatory networks with direct physical interactions from microarray expression data using C3NET. | 2019-07-21 |

r-caper | public | Functions for performing phylogenetic comparative analyses. | 2019-07-21 |

r-captioner | public | Provides a method for automatically numbering figures, tables, or other objects. Captions can be displayed in full, or as citations. This is especially useful for adding figures and tables to R markdown documents without having to numbering them manually. | 2019-07-21 |

r-ccp | public | Significance tests for canonical correlation analysis, including asymptotic tests and a Monte Carlo method | 2019-07-21 |

r-cdft | public | This package proposes a statistical downscaling method for cumulative distribution functions (CDF), as well as the computation of the Cram\`er-von Mises statistics U, and the Kolmogorov-Smirnov statistics KS. | 2019-07-21 |

r-cobs | public | Qualitatively Constrained (Regression) Smoothing Splines via Linear Programming and Sparse Matrices. | 2019-07-21 |

r-collapsibletree | public | Interactive Reingold-Tilford tree diagrams created using 'D3.js', where every node can be expanded and collapsed by clicking on it. Tooltips and color gradients can be mapped to nodes using a numeric column in the source data frame. See 'collapsibleTree' website for more information and examples. | 2019-07-21 |

r-collateral | public | The purrr package allows you to capture the side effects (errors, warning, messages and other output) of functions using safely() and quietly(). Using collateral, you can quickly see which elements of a list (or list-column) returned results, which threw errors and which returned warnings or other output. | 2019-07-21 |

r-chemometricswithr | public | Functions and scripts used in the book "Chemometrics with R - Multivariate Data Analysis in the Natural Sciences and Life Sciences" by Ron Wehrens, Springer (2011). Data used in the package are available from github. | 2019-07-21 |

r-conicfit | public | Geometric circle fitting with Levenberg-Marquardt (a, b, R), Levenberg-Marquardt reduced (a, b), Landau, Spath and Chernov-Lesort. Algebraic circle fitting with Taubin, Kasa, Pratt and Fitzgibbon-Pilu-Fisher. Geometric ellipse fitting with ellipse LMG (geometric parameters) and conic LMA (algebraic parameters). Algebraic ellipse fitting with Fitzgibbon-Pilu-Fisher and Taubin. | 2019-07-21 |

r-clustermq | public | Evaluate arbitrary function calls using workers on HPC schedulers in single line of code. All processing is done on the network without accessing the file system. Remote schedulers are supported via SSH. | 2019-07-21 |

r-chemometrics | public | R companion to the book "Introduction to Multivariate Statistical Analysis in Chemometrics" written by K. Varmuza and P. Filzmoser (2009). | 2019-07-21 |

Gallery

About

Documentation

Support

About Anaconda, Inc.

Download Anaconda