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gsshapyorm
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public |
SQLAlchemy Object Relational Model for GSSHA model files.
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2025-09-24 |
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r-forestly
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public |
Interactive forest plot for clinical trial safety analysis using 'metalite', 'reactable', 'plotly', and Analysis Data Model (ADaM) datasets. Includes functionality for adverse event filtering, incidence-based group filtering, hover-over reveals, and search and sort operations. The workflow allows for metadata construction, data preparation, output formatting, and interactive plot generation.
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2025-09-24 |
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r-ggnetwork
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public |
Geometries to plot network objects with 'ggplot2'.
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2025-09-24 |
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r-tsoutliers
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public |
Detection of Outliers in Time Series.
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2025-09-24 |
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r-qqman
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public |
Create Q-Q and manhattan plots for GWAS data from PLINK results.
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2025-09-24 |
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r-configr
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public |
Implements the JSON, INI, YAML and TOML parser for R setting and writing of configuration file. The functionality of this package is similar to that of package 'config'.
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2025-09-24 |
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r-neo4r
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public |
A Modern and Flexible 'Neo4J' Driver, allowing you to query data on a 'Neo4J' server and handle the results in R. It's modern in the sense it provides a driver that can be easily integrated in a data analysis workflow, especially by providing an API working smoothly with other data analysis and graph packages. It's flexible in the way it returns the results, by trying to stay as close as possible to the way 'Neo4J' returns data. That way, you have the control over the way you will compute the results. At the same time, the result is not too complex, so that the "heavy lifting" of data wrangling is not left to the user.
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2025-09-24 |
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numba-cuda
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public |
A CUDA target for Numba
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2025-09-24 |
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r-protoclust
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public |
Performs minimax linkage hierarchical clustering. Every cluster has an associated prototype element that represents that cluster as described in Bien, J., and Tibshirani, R. (2011), "Hierarchical Clustering with Prototypes via Minimax Linkage," The Journal of the American Statistical Association, 106(495), 1075-1084.
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2025-09-24 |
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r-webgestaltr
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public |
The web version WebGestalt <http://www.webgestalt.org> supports 12 organisms, 354 gene identifiers and 321,251 function categories. Users can upload the data and functional categories with their own gene identifiers. In addition to the Over-Representation Analysis, WebGestalt also supports Gene Set Enrichment Analysis and Network Topology Analysis. The user-friendly output report allows interactive and efficient exploration of enrichment results. The WebGestaltR package not only supports all above functions but also can be integrated into other pipeline or simultaneously analyze multiple gene lists.
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2025-09-24 |
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r-clinify
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public |
The primary motivation of this package is to take the things that are great about the R packages 'flextable' <https://davidgohel.github.io/flextable/> and 'officer' <https://davidgohel.github.io/officer/>, take the standard and complex pieces of formatting clinical tables for regulatory use, and simplify the tedious pieces.
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2025-09-24 |
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r-fakemake
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public |
Use R as a minimal build system. This might come in handy if you are developing R packages and can not use a proper build system. Stay away if you can (use a proper build system).
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2025-09-24 |
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r-raceid
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public |
Application of 'RaceID' allows inference of cell types and prediction of lineage trees by he StemID2 algorithm. Herman, J.S., Sagar, Grün D. (2018) <DOI:10.1038/nmeth.4662>.
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2025-09-24 |
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floris
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public |
A controls-oriented engineering wake model.
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2025-09-24 |
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r-rscc
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public |
Evaluates R source codes by variable and/or functions names. Similar source codes should deliver similarity coefficients near one. Since neither the frequency nor the order of the used names is considered, a manual inspection of the R source code is required to check for similarity. Possible use cases include detection of code clones for improving software quality and of plagiarism amongst students' assignments.
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2025-09-24 |
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zenodo_backpack
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public |
Manage data bundled with bioinformatic software through Zenodo DOI integration
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2025-09-24 |
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r-hergm
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public |
Hierarchical exponential-family random graph models with local dependence. See Schweinberger and Luna (2018) <doi:10.18637/jss.v085.i01>.
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2025-09-24 |
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r-ggraph
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public |
The grammar of graphics as implemented in ggplot2 is a poor fit for graph and network visualizations due to its reliance on tabular data input. ggraph is an extension of the ggplot2 API tailored to graph visualizations and provides the same flexible approach to building up plots layer by layer.
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2025-09-24 |
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rattler-index
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public |
Index conda channels using rattler
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2025-09-24 |
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r-skynet
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public |
A flexible tool that allows generating bespoke air transport statistics for urban studies based on publicly available data from the Bureau of Transport Statistics (BTS) in the United States <https://www.transtats.bts.gov/databases.asp?Mode_ID=1&Mode_Desc=Aviation&Subject_ID2=0>.
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2025-09-24 |
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r-mrmre
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public |
Computes mutual information matrices from continuous, categorical and survival variables, as well as feature selection with minimum redundancy, maximum relevance (mRMR) and a new ensemble mRMR technique.
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2025-09-24 |
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r-baseline
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public |
Collection of baseline correction algorithms, along with a framework and a GUI for optimising baseline algorithm parameters. Typical use of the package is for removing background effects from spectra originating from various types of spectroscopy and spectrometry, possibly optimizing this with regard to regression or classification results. Correction methods include polynomial fitting, weighted local smoothers and many more.
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2025-09-24 |
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r-calf
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public |
Contains greedy algorithms for coarse approximation linear functions.
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2025-09-24 |
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r-pca3d
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public |
Functions simplifying presentation of PCA models in a 3D interactive representation using 'rgl'.
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2025-09-24 |
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r-gson
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public |
Proposes a new file format ('gson') for storing gene set and related information, and provides read, write and other utilities to process this file format.
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2025-09-24 |
