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r-dbmodelr
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public |
An ORM in R
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2025-09-24 |
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r-rlab
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public |
Functions and Datasets Required for ST370 class
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2025-09-24 |
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r-strawr
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public |
API for fast data extraction for .hic files that provides programmatic access to the matrices. It doesn't store the pointer data for all the matrices, only the one queried, and currently we are only supporting matrices (not vectors).
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2025-09-24 |
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r-qiimer
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public |
Open QIIME output files in R, compute statistics, and create plots from the data.
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2025-09-24 |
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r-rcsf
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public |
Cloth Simulation Filter (CSF) is an airborne LiDAR (Light Detection and Ranging) ground points filtering algorithm which is based on cloth simulation. It tries to simulate the interactions between the cloth nodes and the corresponding LiDAR points, the locations of the cloth nodes can be determined to generate an approximation of the ground surface.
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2025-09-24 |
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r-tidycmprsk
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public |
Provides an intuitive interface for working with the competing risk endpoints. The package wraps the 'cmprsk' package, and exports functions for univariate cumulative incidence estimates and competing risk regression. Methods follow those introduced in Fine and Gray (1999) <doi:10.1002/sim.7501>.
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2025-09-24 |
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r-cyphr
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public |
Encryption wrappers, using low-level support from 'sodium' and 'openssl'. 'cyphr' tries to smooth over some pain points when using encryption within applications and data analysis by wrapping around differences in function names and arguments in different encryption providing packages. It also provides high-level wrappers for input/output functions for seamlessly adding encryption to existing analyses.
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2025-09-24 |
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r-emoa
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public |
Collection of building blocks for the design and analysis of evolutionary multiobjective optimization algorithms.
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2025-09-24 |
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r-shinipsum
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public |
Prototype your 'shiny' apps quickly with these Lorem-Ipsum helper functions. Generate random elements for 'shiny' outputs that can be used as placeholder in your application.
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2025-09-24 |
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r-spscomps
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public |
The systemPipeShiny (SPS) framework comes with many UI and server components. However, installing the whole framework is heavy and takes some time. If you would like to use UI and server components from SPS in your own Shiny apps, do not hesitate to try this package.
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2025-09-24 |
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r-howmany
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public |
When testing multiple hypotheses simultaneously, this package provides functionality to calculate a lower bound for the number of correct rejections (as a function of the number of rejected hypotheses), which holds simultaneously -with high probability- for all possible number of rejections. As a special case, a lower bound for the total number of false null hypotheses can be inferred. Dependent test statistics can be handled for multiple tests of associations. For independent test statistics, it is sufficient to provide a list of p-values.
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2025-09-24 |
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r-canopy
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public |
A statistical framework and computational procedure for identifying the sub-populations within a tumor, determining the mutation profiles of each subpopulation, and inferring the tumor's phylogenetic history. The input are variant allele frequencies (VAFs) of somatic single nucleotide alterations (SNAs) along with allele-specific coverage ratios between the tumor and matched normal sample for somatic copy number alterations (CNAs). These quantities can be directly taken from the output of existing software. Canopy provides a general mathematical framework for pooling data across samples and sites to infer the underlying parameters. For SNAs that fall within CNA regions, Canopy infers their temporal ordering and resolves their phase. When there are multiple evolutionary configurations consistent with the data, Canopy outputs all configurations along with their confidence assessment.
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2025-09-24 |
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r-mikropml
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public |
User-Friendly R Package for Supervised Machine Learning Pipelines
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2025-09-24 |
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r-arules
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public |
Provides the infrastructure for representing, manipulating and analyzing transaction data and patterns (frequent itemsets and association rules). Also provides C implementations of the association mining algorithms Apriori and Eclat. See Christian Borgelt (2012) <doi:10.1002/widm.1074>.
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2025-09-24 |
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r-fftrees
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public |
Create, visualize, and test fast-and-frugal decision trees (FFTs). FFTs are very simple decision trees for binary classification problems. FFTs can be preferable to more complex algorithms because they are easy to communicate, require very little information, and are robust against overfitting.
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2025-09-24 |
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cashocs
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public |
Computational Adjoint-Based Shape Optimization and Optimal Control Software
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2025-09-24 |
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metadata-crawler
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public |
Crawl, extract and push climate metadata for indexing.
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2025-09-24 |
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onnxscript
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public |
Naturally author ONNX functions and models using a subset of Python
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2025-09-24 |
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git-crypt
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public |
Transparent file encryption in git
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2025-09-24 |
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galaxy-tool-util
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public |
Galaxy Tool and Tool Dependency Utilities
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2025-09-24 |
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galaxy-tool-util-models
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public |
Pydantic models for Galaxy tools
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2025-09-24 |
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r-rstackdeque
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public |
Provides fast, persistent (side-effect-free) stack, queue and deque (double-ended-queue) data structures. While deques include a superset of functionality provided by queues, in these implementations queues are more efficient in some specialized situations. See the documentation for rstack, rdeque, and rpqueue for details.
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2025-09-24 |
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r-cooccur
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public |
This R package applies the probabilistic model of species co-occurrence (Veech 2013) to a set of species distributed among a set of survey or sampling sites. The algorithm calculates the observed and expected frequencies of co-occurrence between each pair of species. The expected frequency is based on the distribution of each species being random and independent of the other species. The analysis returns the probabilities that a more extreme (either low or high) value of co-occurrence could have been obtained by chance. The package also includes functions for visualizing species co-occurrence results and preparing data for downstream analyses.
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2025-09-24 |
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galaxy-util
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public |
Galaxy Generic Utilities
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2025-09-24 |
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google-api-python-client
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public |
Google API Client Library for Python
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2025-09-24 |
