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r-protoclust
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public |
Performs minimax linkage hierarchical clustering. Every cluster has an associated prototype element that represents that cluster as described in Bien, J., and Tibshirani, R. (2011), "Hierarchical Clustering with Prototypes via Minimax Linkage," The Journal of the American Statistical Association, 106(495), 1075-1084.
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2025-09-24 |
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libarrow-compute
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public |
C++ libraries for Apache Arrow Compute
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2025-09-24 |
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r-webgestaltr
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public |
The web version WebGestalt <http://www.webgestalt.org> supports 12 organisms, 354 gene identifiers and 321,251 function categories. Users can upload the data and functional categories with their own gene identifiers. In addition to the Over-Representation Analysis, WebGestalt also supports Gene Set Enrichment Analysis and Network Topology Analysis. The user-friendly output report allows interactive and efficient exploration of enrichment results. The WebGestaltR package not only supports all above functions but also can be integrated into other pipeline or simultaneously analyze multiple gene lists.
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2025-09-24 |
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r-clinify
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public |
The primary motivation of this package is to take the things that are great about the R packages 'flextable' <https://davidgohel.github.io/flextable/> and 'officer' <https://davidgohel.github.io/officer/>, take the standard and complex pieces of formatting clinical tables for regulatory use, and simplify the tedious pieces.
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2025-09-24 |
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r-fakemake
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public |
Use R as a minimal build system. This might come in handy if you are developing R packages and can not use a proper build system. Stay away if you can (use a proper build system).
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2025-09-24 |
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r-raceid
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public |
Application of 'RaceID' allows inference of cell types and prediction of lineage trees by he StemID2 algorithm. Herman, J.S., Sagar, Grün D. (2018) <DOI:10.1038/nmeth.4662>.
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2025-09-24 |
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floris
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public |
A controls-oriented engineering wake model.
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2025-09-24 |
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r-rscc
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public |
Evaluates R source codes by variable and/or functions names. Similar source codes should deliver similarity coefficients near one. Since neither the frequency nor the order of the used names is considered, a manual inspection of the R source code is required to check for similarity. Possible use cases include detection of code clones for improving software quality and of plagiarism amongst students' assignments.
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2025-09-24 |
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zenodo_backpack
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public |
Manage data bundled with bioinformatic software through Zenodo DOI integration
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2025-09-24 |
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r-hergm
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public |
Hierarchical exponential-family random graph models with local dependence. See Schweinberger and Luna (2018) <doi:10.18637/jss.v085.i01>.
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2025-09-24 |
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r-ggraph
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public |
The grammar of graphics as implemented in ggplot2 is a poor fit for graph and network visualizations due to its reliance on tabular data input. ggraph is an extension of the ggplot2 API tailored to graph visualizations and provides the same flexible approach to building up plots layer by layer.
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2025-09-24 |
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rattler-index
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public |
Index conda channels using rattler
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2025-09-24 |
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r-skynet
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public |
A flexible tool that allows generating bespoke air transport statistics for urban studies based on publicly available data from the Bureau of Transport Statistics (BTS) in the United States <https://www.transtats.bts.gov/databases.asp?Mode_ID=1&Mode_Desc=Aviation&Subject_ID2=0>.
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2025-09-24 |
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r-mrmre
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public |
Computes mutual information matrices from continuous, categorical and survival variables, as well as feature selection with minimum redundancy, maximum relevance (mRMR) and a new ensemble mRMR technique.
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2025-09-24 |
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r-baseline
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public |
Collection of baseline correction algorithms, along with a framework and a GUI for optimising baseline algorithm parameters. Typical use of the package is for removing background effects from spectra originating from various types of spectroscopy and spectrometry, possibly optimizing this with regard to regression or classification results. Correction methods include polynomial fitting, weighted local smoothers and many more.
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2025-09-24 |
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r-calf
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public |
Contains greedy algorithms for coarse approximation linear functions.
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2025-09-24 |
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r-pca3d
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public |
Functions simplifying presentation of PCA models in a 3D interactive representation using 'rgl'.
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2025-09-24 |
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r-gson
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public |
Proposes a new file format ('gson') for storing gene set and related information, and provides read, write and other utilities to process this file format.
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2025-09-24 |
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r-fpp2
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public |
All data sets required for the examples and exercises in the book "Forecasting: principles and practice" by Rob J Hyndman and George Athanasopoulos <https://OTexts.org/fpp2/>. All packages required to run the examples are also loaded.
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2025-09-24 |
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r-minicran
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public |
Makes it possible to create an internally consistent repository consisting of selected packages from CRAN-like repositories. The user specifies a set of desired packages, and 'miniCRAN' recursively reads the dependency tree for these packages, then downloads only this subset. The user can then install packages from this repository directly, rather than from CRAN. This is useful in production settings, e.g. server behind a firewall, or remote locations with slow (or zero) Internet access.
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2025-09-24 |
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r-twfy
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public |
An R wrapper around the API of TheyWorkForYou, a parliamentary monitoring site that scrapes and repackages Hansard (the UK's parliamentary record) and augments it with information from the Register of Members' Interests, election results, and voting records to provide a unified source of information about UK legislators and their activities. See <http://www.theyworkforyou.com> for details.
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2025-09-24 |
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r-tuneranger
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public |
Tuning random forest with one line. The package is mainly based on the packages 'ranger' and 'mlrMBO'.
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2025-09-24 |
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r-plsgenomics
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public |
Routines for PLS-based genomic analyses, implementing PLS methods for classification with microarray data and prediction of transcription factor activities from combined ChIP-chip analysis. The >=1.2-1 versions include two new classification methods for microarray data: GSIM and Ridge PLS. The >=1.3 versions includes a new classification method combining variable selection and compression in logistic regression context: logit-SPLS; and an adaptive version of the sparse PLS.
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2025-09-24 |
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r-dlookr
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public |
A collection of tools that support data diagnosis, exploration, and transformation. Data diagnostics provides information and visualization of missing values and outliers and unique and negative values to help you understand the distribution and quality of your data. Data exploration provides information and visualization of the descriptive statistics of univariate variables, normality tests and outliers, correlation of two variables, and relationship between target variable and predictor. Data transformation supports binning for categorizing continuous variables, imputates missing values and outliers, resolving skewness. And it creates automated reports that support these three tasks.
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2025-09-24 |
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streamlit
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public |
A faster way to build and share data apps
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2025-09-24 |
