conda-forge / packages

Package Name Access Summary Updated
r-cghflasso public Spatial smoothing and hot spot detection using the fused lasso regression 2019-08-21
r-blockmodeling public This is primarily meant as an implementation of generalized blockmodeling for valued networks. In addition, measures of similarity or dissimilarity based on structural equivalence and regular equivalence (REGE algorithms) can be computed and partitioned matrices can be plotted: Žiberna (2007)<doi:10.1016/j.socnet.2006.04.002>, Žiberna (2008)<doi:10.1080/00222500701790207>, Žiberna (2014)<doi:10.1016/j.socnet.2014.04.002>. 2019-08-21
r-circular public Circular Statistics, from "Topics in circular Statistics" (2001) S. Rao Jammalamadaka and A. SenGupta, World Scientific. 2019-08-21
r-bglr public Bayesian Generalized Linear Regression. 2019-08-21
transonic public Make your Python code fly at transonic speeds! 2019-08-21
r-coxphf public Implements Firth's penalized maximum likelihood bias reduction method for Cox regression which has been shown to provide a solution in case of monotone likelihood (nonconvergence of likelihood function). The program fits profile penalized likelihood confidence intervals which were proved to outperform Wald confidence intervals. 2019-08-21
r-gee public Generalized Estimation Equation solver. 2019-08-21
r-akima public Several cubic spline interpolation methods of H. Akima for irregular and regular gridded data are available through this package, both for the bivariate case (irregular data: ACM 761, regular data: ACM 760) and univariate case (ACM 433 and ACM 697). Linear interpolation of irregular gridded data is also covered by reusing D. J. Renkas triangulation code which is part of Akimas Fortran code. A bilinear interpolator for regular grids was also added for comparison with the bicubic interpolator on regular grids. 2019-08-21
r-aws public We provide a collection of R-functions implementing adaptive smoothing procedures in 1D, 2D and 3D. This includes the Propagation-Separation Approach to adaptive smoothing as described in "J. Polzehl and V. Spokoiny (2006) <DOI:10.1007/s00440-005-0464-1>", "J. Polzehl and V. Spokoiny (2004) <DOI:10.20347/WIAS.PREPRINT.998>" and "J. Polzehl, K. Papafitsoros, K. Tabelow (2018) <DOI:10.20347/WIAS.PREPRINT.2520>", the Intersecting Confidence Intervals (ICI), variational approaches and a non-local means filter. 2019-08-21
r-hiddenmarkov public Contains functions for the analysis of Discrete Time Hidden Markov Models, Markov Modulated GLMs and the Markov Modulated Poisson Process. It includes functions for simulation, parameter estimation, and the Viterbi algorithm. See the topic "HiddenMarkov" for an introduction to the package, and "Change Log" for a list of recent changes. The algorithms are based of those of Walter Zucchini. 2019-08-21
r-clustercrit public Compute clustering validation indices. 2019-08-21
r-coxboost public This package provides routines for fitting Cox models by likelihood based boosting for a single endpoint or in presence of competing risks 2019-08-21
r-dppackage public Functions to perform inference via simulation from the posterior distributions for Bayesian nonparametric and semiparametric models. Although the name of the package was motivated by the Dirichlet Process prior, the package considers and will consider other priors on functional spaces. So far, DPpackage includes models considering Dirichlet Processes, Dependent Dirichlet Processes, Dependent Poisson- Dirichlet Processes, Hierarchical Dirichlet Processes, Polya Trees, Linear Dependent Tailfree Processes, Mixtures of Triangular distributions, Random Bernstein polynomials priors and Dependent Bernstein Polynomials. The package also includes models considering Penalized B-Splines. Includes semiparametric models for marginal and conditional density estimation, ROC curve analysis, interval censored data, binary regression models, generalized linear mixed models, IRT type models, and generalized additive models. Also contains functions to compute Pseudo-Bayes factors for model comparison, and to elicitate the precision parameter of the Dirichlet Process. To maximize computational efficiency, the actual sampling for each model is done in compiled FORTRAN. The functions return objects which can be subsequently analyzed with functions provided in the 'coda' package. 2019-08-21
r-gam public Functions for fitting and working with generalized additive models, as described in chapter 7 of "Statistical Models in S" (Chambers and Hastie (eds), 1991), and "Generalized Additive Models" (Hastie and Tibshirani, 1990). 2019-08-21
r-earth public Build regression models using the techniques in Friedman's papers "Fast MARS" and "Multivariate Adaptive Regression Splines" <doi:10.1214/aos/1176347963>. (The term "MARS" is trademarked and thus not used in the name of the package.) 2019-08-21
r-hdtweedie public This package implements a iteratively reweighed least square (IRLS) strategy that incorporates a blockwise majorization decent (BMD) method, for efficiently computing the solution paths of the (grouped) lasso and the (grouped) elastic net for the Tweedie model. 2019-08-21
r-glasso public Estimation of a sparse inverse covariance matrix using a lasso (L1) penalty. Facilities are provided for estimates along a path of values for the regularization parameter. 2019-08-21
r-hiclimr public A tool for Hierarchical Climate Regionalization applicable to any correlation-based clustering. It adds several features and a new clustering method (called, 'regional' linkage) to hierarchical clustering in R ('hclust' function in 'stats' library): data regridding, coarsening spatial resolution, geographic masking, contiguity-constrained clustering, data filtering by mean and/or variance thresholds, data preprocessing (detrending, standardization, and PCA), faster correlation function with preliminary big data support, different clustering methods, hybrid hierarchical clustering, multivariate clustering (MVC), cluster validation, visualization of regionalization results, and exporting region map and mean timeseries into NetCDF-4 file. 2019-08-21
normaliz public Normaliz is an open source tool for computations in affine monoids, vector configurations, lattice polytopes, and rational cones. 2019-08-21
sphinxdft public S/PHI/nX is a C++ library for materials simulation, mostly electronic-structure theory 2019-08-21
marshmallow-enum public Enum handling for Marshmallow 2019-08-21
plio public input/output library for planetary science data 2019-08-21
libitk public Runtime libraries and header files for the Insight Toolkit for segmentation and registration. 2019-08-21
flask-talisman public HTTP security headers for Flask 2019-08-20
graphql-relay public Relay implementation for Python 2019-08-20
r-hier.part public Variance partition of a multivariate data set 2019-08-20
xlsxwriter public A Python module for creating Excel XLSX files 2019-08-20
r-lokern public Kernel regression smoothing with adaptive local or global plug-in bandwidth selection. 2019-08-20
r-labdsv public A variety of ordination and community analyses useful in analysis of data sets in community ecology. Includes many of the common ordination methods, with graphical routines to facilitate their interpretation, as well as several novel analyses. 2019-08-20
r-logicreg public Routines for fitting Logic Regression models. Logic Regression is described in Ruczinski, Kooperberg, and LeBlanc (2003) <DOI:10.1198/1061860032238>. Monte Carlo Logic Regression is described in and Kooperberg and Ruczinski (2005) <DOI:10.1002/gepi.20042>. 2019-08-20
r-maptpx public Posterior maximization for topic models (LDA) in text analysis, as described in Taddy (2012) `on estimation and selection for topic models'. Previous versions of this code were included as part of the textir package. If you want to take advantage of openmp parallelization, uncomment the relevant flags in src/MAKEVARS before compiling. 2019-08-20
ann public ANN: A Library for Approximate Nearest Neighbor Searching 2019-08-20
awscli public Universal Command Line Environment for AWS. 2019-08-20
quilt3 public Quilt: where data comes together 2019-08-20
boto3 public Amazon Web Services SDK for Python 2019-08-20
r-mpmi public Uses a kernel smoothing approach to calculate Mutual Information for comparisons between all types of variables including continuous vs continuous, continuous vs discrete and discrete vs discrete. Uses a nonparametric bias correction giving Bias Corrected Mutual Information (BCMI). Implemented efficiently in Fortran 95 with OpenMP and suited to large genomic datasets. 2019-08-20
r-multimode public Different examples and methods for testing (including different proposals described in Ameijeiras-Alonso et al., 2018 <DOI:10.1007/s11749-018-0611-5>) and exploring (including the mode tree, mode forest and SiZer) the number of modes using nonparametric techniques. 2019-08-20
r-msgps public This package computes the degrees of freedom of the lasso, elastic net, generalized elastic net and adaptive lasso based on the generalized path seeking algorithm. The optimal model can be selected by model selection criteria including Mallows' Cp, bias-corrected AIC (AICc), generalized cross validation (GCV) and BIC. 2019-08-20
r-multitaper public Implements multitaper spectral analysis using discrete prolate spheroidal sequences (Slepians) and sine tapers. It includes an adaptive weighted multitaper spectral estimate, a coherence estimate, Thomson's Harmonic F-test, and complex demodulation. The Slepians sequences are generated efficiently using a tridiagonal matrix solution, and jackknifed confidence intervals are available for most estimates. 2019-08-20
r-norm public Analysis of multivariate normal datasets with missing values 2019-08-20
hyperion-fortran public Hyperion Radiation Transfer Code 2019-08-20
marshmallow public A lightweight library for converting complex datatypes to and from native Python datatypes. 2019-08-20
botocore public Low-level, data-driven core of boto 3. 2019-08-20
hdmedians public High-dimensional medians 2019-08-20
r-oceanview public Functions for transforming and viewing 2-D and 3-D (oceanographic) data and model output. 2019-08-20
buildbot-pkg public Buildbot packaging tools 2019-08-20
buildbot-grid-view public Buildbot Grid View plugin 2019-08-20
r-qtlrel public This software provides tools for quantitative trait mapping in populations such as advanced intercross lines where relatedness among individuals should not be ignored. It can estimate background genetic variance components, impute missing genotypes, simulate genotypes, perform a genome scan for putative quantitative trait loci (QTL), and plot mapping results. It also has functions to calculate identity coefficients from pedigrees, especially suitable for pedigrees that consist of a large number of generations, or estimate identity coefficients from genotypic data in certain circumstances. 2019-08-20
r-pamr public Some functions for sample classification in microarrays. 2019-08-20
r-signal public A set of signal processing functions originally written for 'Matlab' and 'Octave'. Includes filter generation utilities, filtering functions, resampling routines, and visualization of filter models. It also includes interpolation functions. 2019-08-20
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