Package Name | Access | Summary | Updated |
---|---|---|---|

numba | public | NumPy aware dynamic Python compiler using LLVM | 2019-07-19 |

r-pscl | public | Bayesian analysis of item-response theory (IRT) models, roll call analysis; computing highest density regions; maximum likelihood estimation of zero-inflated and hurdle models for count data; goodness-of-fit measures for GLMs; data sets used in writing and teaching at the Political Science Computational Laboratory; seats-votes curves. | 2019-07-19 |

r-randomfields | public | Methods for the inference on and the simulation of Gaussian fields are provided, as well as methods for the simulation of extreme value random fields. | 2019-07-19 |

r-randtoolbox | public | Provides (1) pseudo random generators - general linear congruential generators, multiple recursive generators and generalized feedback shift register (SF-Mersenne Twister algorithm and WELL generators); (2) quasi random generators - the Torus algorithm, the Sobol sequence, the Halton sequence (including the Van der Corput sequence) and (3) some generator tests - the gap test, the serial test, the poker test. See e.g. Gentle (2003) <doi:10.1007/b97336>. The package can be provided without the rngWELL dependency on demand. Take a look at the Distribution task view of types and tests of random number generators. Version in Memoriam of Diethelm and Barbara Wuertz. | 2019-07-19 |

r-pspearman | public | Spearman's rank correlation test with precomputed exact null distribution for n <= 22. | 2019-07-19 |

r-pspline | public | Smoothing splines with penalties on order m derivatives. | 2019-07-19 |

r-robust | public | Methods for robust statistics, a state of the art in the early 2000s, notably for robust regression and robust multivariate analysis. | 2019-07-19 |

r-rbokeh | public | A native R plotting library that provides a flexible declarative interface for creating interactive web-based graphics, backed by the Bokeh visualization library <http://bokeh.pydata.org/>. | 2019-07-19 |

r-qdaptools | public | A collection of tools associated with the 'qdap' package that may be useful outside of the context of text analysis. | 2019-07-19 |

r-qrcode | public | Create QRcode in R. | 2019-07-19 |

r-protolite | public | Optimized C++ implementations for reading and writing protocol-buffers. Currently supports 'rexp.proto' for serializing R objects and 'geobuf.proto' for geojson data. This lightweight package is complementary to the much larger 'RProtoBuf' package which provides a full featured toolkit for working with protocol-buffers in R. | 2019-07-19 |

r-r.huge | public | DEPRECATED. Do not start building new projects based on this package. Cross-platform alternatives are the following packages: bigmemory (CRAN), ff (CRAN), BufferedMatrix (Bioconductor). The main usage of it was inside the aroma.affymetrix package. (The package currently provides a class representing a matrix where the actual data is stored in a binary format on the local file system. This way the size limit of the data is set by the file system and not the memory.) | 2019-07-19 |

r-ufs | public | This is a new version of the 'userfriendlyscience' package, which has grown a bit unwieldy. Therefore, distinct functionalities are being 'consciously uncoupled' into different packages. This package contains the general-purpose tools and utilities (see the 'behaviorchange' and the 'rosetta' packages for other functionality), and is the most direct 'successor' of the original 'userfriendlyscience' package. For example, this package contains a number of basic functions to create higher level plots, such as diamond plots, to easily plot sampling distributions, to generate confidence intervals, to plan study sample sizes for confidence intervals, and to do some basic operations such as (dis)attenuate effect size estimates. | 2019-07-19 |

r-kknn | public | Weighted k-Nearest Neighbors for Classification, Regression and Clustering. | 2019-07-19 |

r-rcppannoy | public | 'Annoy' is a small C++ library for Approximate Nearest Neighbors written for efficient memory usage as well an ability to load from / save to disk. This package provides an R interface by relying on the 'Rcpp' package, exposing the same interface as the original Python wrapper to 'Annoy'. See <https://github.com/spotify/annoy> for more on 'Annoy'. 'Annoy' is released under Version 2.0 of the Apache License. Also included is a small Windows port of 'mmap' which is released under the MIT license. | 2019-07-19 |

r-refgenome | public | Contains functionalities for importing and managing downloaded genome annotation data from 'Ensembl' genome browser (European Bioinformatics Institute, <https://www.ensembl.org>) and from 'UCSC' genome browser (University of California, Santa Cruz, <https://genome.ucsc.edu/>) and annotation routines for genomic positions and splice site positions. | 2019-07-19 |

r-readstata13 | public | Function to read and write the 'Stata' file format. | 2019-07-19 |

xeus-python | public | Jupyter kernel for the Python programming language based on xeus | 2019-07-19 |

r-mlogit | public | Maximum Likelihood estimation of random utility discrete choice models, as described in Kenneth Train (2012) Discrete Choice Methods with Simulations <doi:10.1017/CBO9780511805271>. | 2019-07-19 |

r-rccmisc | public | Functions either required by other Swedish Regional Cancer Center packages or standalone functions outside the scope of other packages. | 2019-07-19 |

r-refmanager | public | Provides tools for importing and working with bibliographic references. It greatly enhances the 'bibentry' class by providing a class 'BibEntry' which stores 'BibTeX' and 'BibLaTeX' references, supports 'UTF-8' encoding, and can be easily searched by any field, by date ranges, and by various formats for name lists (author by last names, translator by full names, etc.). Entries can be updated, combined, sorted, printed in a number of styles, and exported. 'BibTeX' and 'BibLaTeX' '.bib' files can be read into 'R' and converted to 'BibEntry' objects. Interfaces to 'NCBI Entrez', 'CrossRef', and 'Zotero' are provided for importing references and references can be created from locally stored 'PDF' files using 'Poppler'. Includes functions for citing and generating a bibliography with hyperlinks for documents prepared with 'RMarkdown' or 'RHTML'. | 2019-07-19 |

r-rcgmin | public | Conjugate gradient minimization of nonlinear functions with box constraints incorporating the Dai/Yuan update. This implementation should be used in place of the "CG" algorithm of the optim() function. | 2019-07-19 |

r-rebus.datetimes | public | Build regular expressions piece by piece using human readable code. This package contains date and time functionality, and is primarily intended to be used by package developers. | 2019-07-19 |

r-rebus.unicode | public | Build regular expressions piece by piece using human readable code. This package contains Unicode functionality, and is primarily intended to be used by package developers. | 2019-07-19 |

r-rebus.numbers | public | Build regular expressions piece by piece using human readable code. This package contains number-related functionality, and is primarily intended to be used by package developers. | 2019-07-19 |

r-reportr | public | Provides a system for reporting messages, which provides certain useful features over the standard R system, such as the incorporation of output consolidation, message filtering, assertions, expression substitution, automatic generation of stack traces for debugging, and conditional reporting based on the current "output level". | 2019-07-19 |

r-rgooglemaps | public | Serves two purposes: (i) Provide a comfortable R interface to query the Google server for static maps, and (ii) Use the map as a background image to overlay plots within R. This requires proper coordinate scaling. | 2019-07-19 |

r-ritis | public | An interface to the Integrated Taxonomic Information System ('ITIS') (<https://www.itis.gov>). Includes functions to work with the 'ITIS' REST API methods (<https://www.itis.gov/ws_description.html>), as well as the 'Solr' web service (<https://www.itis.gov/solr_documentation.html>). | 2019-07-19 |

r-robcompositions | public | Methods for analysis of compositional data including robust methods, imputation, methods to replace rounded zeros, (robust) outlier detection for compositional data, (robust) principal component analysis for compositional data, (robust) factor analysis for compositional data, (robust) discriminant analysis for compositional data (Fisher rule), robust regression with compositional predictors and (robust) Anderson-Darling normality tests for compositional data as well as popular log-ratio transformations (addLR, cenLR, isomLR, and their inverse transformations). In addition, visualisation and diagnostic tools are implemented as well as high and low-level plot functions for the ternary diagram. | 2019-07-19 |

r-rzmq | public | Interface to the 'ZeroMQ' lightweight messaging kernel (see <http://www.zeromq.org/> for more information). | 2019-07-19 |

r-rtweet | public | An implementation of calls designed to collect and organize Twitter data via Twitter's REST and stream Application Program Interfaces (API), which can be found at the following URL: <https://developer.twitter.com/en/docs>. | 2019-07-19 |

r-rly | public | R implementation of the common parsing tools 'lex' and 'yacc'. | 2019-07-19 |

r-rseis | public | Multiple interactive codes to view and analyze seismic data, via spectrum analysis, wavelet transforms, particle motion, hodograms. Includes general time-series tools, plotting, filtering, interactive display. | 2019-07-19 |

xplot | public | C++ backend for the bqplot 2-D plotting library | 2019-07-19 |

xleaflet | public | C++ backend for the jupyter leaflet widget | 2019-07-19 |

ase | public | ASE is a python package providing an open source Atomic Simulation Environment in the Python language. | 2019-07-19 |

r-rsvg | public | Renders vector-based svg images into high-quality custom-size bitmap arrays using 'librsvg2'. The resulting bitmap can be written to e.g. png, jpeg or webp format. In addition, the package can convert images directly to various formats such as pdf or postscript. | 2019-07-19 |

r-rosm | public | Download and plot Open Street Map <http://www.openstreetmap.org/>, Bing Maps <http://www.bing.com/maps> and other tiled map sources. Use to create basemaps quickly and add hillshade to vector-based maps. | 2019-07-19 |

r-rlist | public | No Summary | 2019-07-19 |

r-rvmmin | public | Variable metric nonlinear function minimization with bounds constraints. | 2019-07-19 |

r-rsolnp | public | General Non-linear Optimization Using Augmented Lagrange Multiplier Method. | 2019-07-19 |

r-rotl | public | An interface to the 'Open Tree of Life' API to retrieve phylogenetic trees, information about studies used to assemble the synthetic tree, and utilities to match taxonomic names to 'Open Tree identifiers'. The 'Open Tree of Life' aims at assembling a comprehensive phylogenetic tree for all named species. | 2019-07-19 |

r-rredlist | public | 'IUCN' Red List (<http://apiv3.iucnredlist.org/api/v3/docs>) client. The 'IUCN' Red List is a global list of threatened and endangered species. Functions cover all of the Red List 'API' routes. An 'API' key is required. | 2019-07-19 |

r-shinybs | public | No Summary | 2019-07-19 |

r-dtw | public | A comprehensive implementation of dynamic time warping (DTW) algorithms in R. DTW computes the optimal (least cumulative distance) alignment between points of two time series. Common DTW variants covered include local (slope) and global (window) constraints, subsequence matches, arbitrary distance definitions, normalizations, minimum variance matching, and so on. Provides cumulative distances, alignments, specialized plot styles, etc. | 2019-07-19 |

r-sparsesvd | public | Wrapper around the 'SVDLIBC' library for (truncated) singular value decomposition of a sparse matrix. Currently, only sparse real matrices in Matrix package format are supported. | 2019-07-19 |

r-som | public | Self-Organizing Map (with application in gene clustering). | 2019-07-19 |

r-svgui | public | The SciViews svGUI package eases the management of Graphical User Interfaces (GUI) in R. It is independent from any particular GUI widgets (Tk, Gtk2, native, ...). It centralizes info about GUI elements currently used, and it dispatches GUI calls to the particular toolkits in use in function of the context (is R run at the terminal, within a Tk application, a HTML page?). | 2019-07-19 |

r-vipor | public | Generate a violin point plot, a combination of a violin/histogram plot and a scatter plot by offsetting points within a category based on their density using quasirandom noise. | 2019-07-19 |

r-sgeostat | public | An Object-oriented Framework for Geostatistical Modeling in S+ containing functions for variogram estimation, variogram fitting and kriging as well as some plot functions. Written entirely in S, therefore works only for small data sets in acceptable computing time. | 2019-07-19 |

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