Package Name | Access | Summary | Updated |
---|---|---|---|

r-pspline | public | Smoothing splines with penalties on order m derivatives. | 2019-06-20 |

r-rdpack | public | Functions for manipulation of R documentation objects, including functions reprompt() and ereprompt() for updating 'Rd' documentation for functions, methods and classes; 'Rd' macros for citations and import of references from 'bibtex' files for use in 'Rd' files and 'roxygen2' comments; 'Rd' macros for evaluating and inserting snippets of 'R' code and the results of its evaluation or creating graphics on the fly; and many functions for manipulation of references and Rd files. | 2019-06-20 |

r-rcppparallel | public | High level functions for parallel programming with 'Rcpp'. For example, the 'parallelFor()' function can be used to convert the work of a standard serial "for" loop into a parallel one and the 'parallelReduce()' function can be used for accumulating aggregate or other values. | 2019-06-20 |

r-vegan | public | Ordination methods, diversity analysis and other functions for community and vegetation ecologists. | 2019-06-20 |

pycrc | public | Python libraries for CRC calculations | 2019-06-20 |

r-units | public | Support for measurement units in R vectors, matrices and arrays: automatic propagation, conversion, derivation and simplification of units; raising errors in case of unit incompatibility. Compatible with the POSIXct, Date and difftime classes. Uses the UNIDATA udunits library and unit database for unit compatibility checking and conversion. Documentation about 'units' is provided in the paper by Pebesma, Mailund & Hiebert (2016, <doi:10.32614/RJ-2016-061>), included in this package as a vignette; see 'citation("units")' for details. | 2019-06-20 |

r-rspectra | public | R interface to the 'Spectra' library <https://spectralib.org/> for large-scale eigenvalue and SVD problems. It is typically used to compute a few eigenvalues/vectors of an n by n matrix, e.g., the k largest eigenvalues, which is usually more efficient than eigen() if k << n. This package provides the 'eigs()' function that does the similar job as in 'Matlab', 'Octave', 'Python SciPy' and 'Julia'. It also provides the 'svds()' function to calculate the largest k singular values and corresponding singular vectors of a real matrix. The matrix to be computed on can be dense, sparse, or in the form of an operator defined by the user. | 2019-06-20 |

r-tsp | public | Basic infrastructure and some algorithms for the traveling salesperson problem (also traveling salesman problem; TSP). The package provides some simple algorithms and an interface to the Concorde TSP solver and its implementation of the Chained-Lin-Kernighan heuristic. The code for Concorde itself is not included in the package and has to be obtained separately. | 2019-06-20 |

r-seriation | public | Infrastructure for ordering objects with an implementation of several seriation/sequencing/ordination techniques to reorder matrices, dissimilarity matrices, and dendrograms. Also provides (optimally) reordered heatmaps, color images and clustering visualizations like dissimilarity plots, and visual assessment of cluster tendency plots (VAT and iVAT). | 2019-06-20 |

r-geosphere | public | Spherical trigonometry for geographic applications. That is, compute distances and related measures for angular (longitude/latitude) locations. | 2019-06-20 |

docker-py | public | Python client for Docker. | 2019-06-20 |

r-xts | public | Provide for uniform handling of R's different time-based data classes by extending zoo, maximizing native format information preservation and allowing for user level customization and extension, while simplifying cross-class interoperability. | 2019-06-20 |

awscli | public | Universal Command Line Environment for AWS. | 2019-06-20 |

r-rzmq | public | Interface to the 'ZeroMQ' lightweight messaging kernel (see <http://www.zeromq.org/> for more information). | 2019-06-20 |

r-rms | public | Regression modeling, testing, estimation, validation, graphics, prediction, and typesetting by storing enhanced model design attributes in the fit. 'rms' is a collection of functions that assist with and streamline modeling. It also contains functions for binary and ordinal logistic regression models, ordinal models for continuous Y with a variety of distribution families, and the Buckley-James multiple regression model for right-censored responses, and implements penalized maximum likelihood estimation for logistic and ordinary linear models. 'rms' works with almost any regression model, but it was especially written to work with binary or ordinal regression models, Cox regression, accelerated failure time models, ordinary linear models, the Buckley-James model, generalized least squares for serially or spatially correlated observations, generalized linear models, and quantile regression. | 2019-06-20 |

r-startupmsg | public | Provides utilities to create or suppress start-up messages. | 2019-06-20 |

r-sfsmisc | public | Useful utilities ['goodies'] from Seminar fuer Statistik ETH Zurich, some of which were ported from S-plus in the 1990's. For graphics, have pretty (Log-scale) axes, an enhanced Tukey-Anscombe plot, combining histogram and boxplot, 2d-residual plots, a 'tachoPlot()', pretty arrows, etc. For robustness, have a robust F test and robust range(). For system support, notably on Linux, provides 'Sys.*()' functions with more access to system and CPU information. Finally, miscellaneous utilities such as simple efficient prime numbers, integer codes, Duplicated(), toLatex.numeric() and is.whole(). | 2019-06-20 |

conda-forge-pinning | public | The baseline versions of software for the conda-forge ecosystem | 2019-06-20 |

kalasiris | public | A Python library to wrap functions and functionality for the Integrated Software for Imagers and Spectrometers (ISIS). | 2019-06-20 |

r-quantmod | public | Specify, build, trade, and analyse quantitative financial trading strategies. | 2019-06-20 |

r-mlogit | public | Maximum Likelihood estimation of random utility discrete choice models, as described in Kenneth Train (2012) Discrete Choice Methods with Simulations <doi:10.1017/CBO9780511805271>. | 2019-06-20 |

r-rosm | public | Download and plot Open Street Map <http://www.openstreetmap.org/>, Bing Maps <http://www.bing.com/maps> and other tiled map sources. Use to create basemaps quickly and add hillshade to vector-based maps. | 2019-06-20 |

dask-jobqueue | public | Easy deployment of Dask Distributed on job queuing systems like PBS, Slurm, LSF and SGE. | 2019-06-20 |

urbansim_defaults | public | Starter models and functionality to use with UrbanSim | 2019-06-20 |

r-raster | public | Reading, writing, manipulating, analyzing and modeling of gridded spatial data. The package implements basic and high-level functions. Processing of very large files is supported. | 2019-06-20 |

voila-gridstack | public | Gridstack template for voila | 2019-06-20 |

flask-rest-api | public | DB agnostic framework to build auto-documented REST APIs with Flask and marshmallow | 2019-06-20 |

r-rann | public | Finds the k nearest neighbours for every point in a given dataset in O(N log N) time using Arya and Mount's ANN library (v1.1.3). There is support for approximate as well as exact searches, fixed radius searches and 'bd' as well as 'kd' trees. The distance is computed using the L2 (Euclidean) metric. Please see package 'RANN.L1' for the same functionality using the L1 (Manhattan, taxicab) metric. | 2019-06-20 |

r-proxy | public | Provides an extensible framework for the efficient calculation of auto- and cross-proximities, along with implementations of the most popular ones. | 2019-06-20 |

r-polspline | public | Routines for the polynomial spline fitting routines hazard regression, hazard estimation with flexible tails, logspline, lspec, polyclass, and polymars, by C. Kooperberg and co-authors. | 2019-06-20 |

sage | public | Sage - Open Source Mathematical Software | 2019-06-20 |

r-geometry | public | Makes the 'Qhull' library <http://www.qhull.org> available in R, in a similar manner as in Octave and MATLAB. Qhull computes convex hulls, Delaunay triangulations, halfspace intersections about a point, Voronoi diagrams, furthest-site Delaunay triangulations, and furthest-site Voronoi diagrams. It runs in 2D, 3D, 4D, and higher dimensions. It implements the Quickhull algorithm for computing the convex hull. Qhull does not support constrained Delaunay triangulations, or mesh generation of non-convex objects, but the package does include some R functions that allow for this. | 2019-06-20 |

r-coin | public | Conditional inference procedures for the general independence problem including two-sample, K-sample (non-parametric ANOVA), correlation, censored, ordered and multivariate problems. | 2019-06-20 |

r-castor | public | Efficient phylogenetic analyses on massive phylogenies comprising up to millions of tips. Functions include pruning, rerooting, calculation of most-recent common ancestors, calculating distances from the tree root and calculating pairwise distances. Calculation of phylogenetic signal and mean trait depth (trait conservatism), ancestral state reconstruction and hidden character prediction of discrete characters, simulating and fitting models of trait evolution, fitting and simulating diversification models, dating trees, comparing trees, and reading/writing trees in Newick format. Citation: Louca, Stilianos and Doebeli, Michael (2017) <doi:10.1093/bioinformatics/btx701>. | 2019-06-20 |

r-cba | public | Implements clustering techniques such as Proximus and Rock, utility functions for efficient computation of cross distances and data manipulation. | 2019-06-20 |

r-dbplyr | public | A 'dplyr' back end for databases that allows you to work with remote database tables as if they are in-memory data frames. Basic features works with any database that has a 'DBI' back end; more advanced features require 'SQL' translation to be provided by the package author. | 2019-06-20 |

r-cairo | public | R graphics device using cairographics library that can be used to create high-quality vector (PDF, PostScript and SVG) and bitmap output (PNG,JPEG,TIFF), and high-quality rendering in displays (X11 and Win32). Since it uses the same back-end for all output, copying across formats is WYSIWYG. Files are created without the dependence on X11 or other external programs. This device supports alpha channel (semi-transparent drawing) and resulting images can contain transparent and semi-transparent regions. It is ideal for use in server environments (file output) and as a replacement for other devices that don't have Cairo's capabilities such as alpha support or anti-aliasing. Backends are modular such that any subset of backends is supported. | 2019-06-20 |

sagemath-db-elliptic-curves | public | A small subset of the data in John Cremona's database of elliptic curves up to conductor 10000 and William Stein's database of interesting curves | 2019-06-20 |

qgis | public | A free and open source Geographic Information System (GIS). | 2019-06-20 |

adaptive-scheduler | public | An asynchronous scheduler for Adaptive | 2019-06-20 |

gobject-introspection | public | Middleware for binding GObject-based code to other languages. | 2019-06-20 |

bilby_pipe | public | Automating the running of bilby for gravitational wave signals | 2019-06-20 |

gawk | public | The awk utility interprets a special-purpose programming language that makes it easy to handle simple data-reformatting jobs. | 2019-06-20 |

miniwdl | public | A static analysis toolkit for the Workflow Description Language | 2019-06-20 |

aiohttp-jinja2 | public | jinja2 template renderer for aiohttp.web (http server for asyncio) | 2019-06-20 |

aiohttp-session | public | sessions for aiohttp.web | 2019-06-20 |

aiomcache | public | Minimal pure python memcached client | 2019-06-20 |

aioredis | public | asyncio (PEP 3156) Redis support | 2019-06-20 |

janus | public | Mixed sync-async queue to interoperate between asyncio tasks and classic threads | 2019-06-20 |

aiohttp-security | public | security for aiohttp.web | 2019-06-20 |

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