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trame-vuetify
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public |
Vuetify widgets for trame
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2025-09-25 |
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r-traits
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public |
Species trait data from many different sources, including sequence data from 'NCBI', plant trait data from 'BETYdb', plant data from the USDA plants database, data from 'EOL' 'Traitbank', Coral traits data (<https://coraltraits.org>), 'Birdlife' International, and more.
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2025-09-25 |
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libcroco
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public |
a standalone CSS2 parsing and manipulation library
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2025-09-25 |
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r-adiv
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public |
Functions, data sets and examples for the calculation of various indices of biodiversity including species, functional and phylogenetic diversity. Part of the indices are expressed in terms of equivalent numbers of species. The package also provides ways to partition biodiversity across spatial or temporal scales (alpha, beta, gamma diversities). In addition to the quantification of biodiversity, ordination approaches are available which rely on diversity indices and allow the detailed identification of species, functional or phylogenetic differences between communities.
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2025-09-25 |
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r-gtextras
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public |
Provides additional functions for creating beautiful tables with 'gt'. The functions are generally wrappers around boilerplate or adding capabilities that are currently not built into 'gt'.
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2025-09-25 |
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r-taxa
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public |
Provides taxonomic classes for groupings of taxonomic names without data, and those with data. Methods provided are "taxonomically aware", in that they know about ordering of ranks, and methods that filter based on taxonomy also filter associated data.
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2025-09-25 |
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r-inspectdf
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public |
A collection of utilities for columnwise summary, comparison and visualisation of data frames. Functions report missingness, categorical levels, numeric distribution, correlation, column types and memory usage.
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2025-09-25 |
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ndcctools
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public |
Tools for large scale distributed computing.
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2025-09-25 |
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aws-cdk.cx-api
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public |
Cloud executable protocol
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2025-09-25 |
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databricks-sdk
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public |
Databricks SDK for Python (Experimental)
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2025-09-25 |
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r-treemapify
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public |
Provides 'ggplot2' geoms for drawing treemaps.
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2025-09-25 |
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r-survminer
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public |
Contains the function 'ggsurvplot()' for drawing easily beautiful and 'ready-to-publish' survival curves with the 'number at risk' table and 'censoring count plot'. Other functions are also available to plot adjusted curves for `Cox` model and to visually examine 'Cox' model assumptions.
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2025-09-25 |
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r-ggseqplot
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public |
A set of wrapper functions that mainly re-produces some of the sequence plots rendered with TraMineR::seqplot() and 'TraMineRextras'. Whereas 'TraMineR' uses base R to produce the plots this library draws on 'ggplot2'. The plots are produced on the basis of a sequence object defined with TraMineR::seqdef(). The package automates the reshaping and plotting of sequence data. Resulting plots are of class 'ggplot', i.e. components can be added and tweaked using '+' and regular 'ggplot2' functions.
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2025-09-25 |
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r-gggenes
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public |
Provides a 'ggplot2' geom and helper functions for drawing gene arrow maps.
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2025-09-25 |
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pytest-run-parallel
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public |
A simple pytest plugin to run tests concurrently
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2025-09-25 |
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r-immunarch
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public |
A comprehensive framework for bioinformatics exploratory analysis of bulk and single-cell T-cell receptor and antibody repertoires. It provides seamless data loading, analysis and visualisation for AIRR (Adaptive Immune Receptor Repertoire) data, both bulk immunosequencing (RepSeq) and single-cell sequencing (scRNAseq). It implements most of the widely used AIRR analysis methods, such as: clonality analysis, estimation of repertoire similarities in distribution of clonotypes and gene segments, repertoire diversity analysis, annotation of clonotypes using external immune receptor databases and clonotype tracking in vaccination and cancer studies. A successor to our previously published 'tcR' immunoinformatics package (Nazarov 2015) <doi:10.1186/s12859-015-0613-1>.
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2025-09-25 |
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essspectroscopy
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public |
Spectroscopy data reduction for the European Spallation Source
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2025-09-25 |
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clarabel
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public |
Python interface for Clarabel: Interior Point Conic Optimization Solver
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2025-09-25 |
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r-ips
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public |
Functions that wrap popular phylogenetic software for sequence alignment, masking of sequence alignments, and estimation of phylogenies and ancestral character states.
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2025-09-25 |
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r-taxize
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public |
Interacts with a suite of web 'APIs' for taxonomic tasks, such as getting database specific taxonomic identifiers, verifying species names, getting taxonomic hierarchies, fetching downstream and upstream taxonomic names, getting taxonomic synonyms, converting scientific to common names and vice versa, and more.
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2025-09-25 |
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r-phytools
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public |
A wide range of functions for phylogenetic analysis. Functionality is concentrated in phylogenetic comparative biology, but also includes numerous methods for visualizing, manipulating, reading or writing, and even inferring phylogenetic trees and data. Included among the functions in phylogenetic comparative biology are various for ancestral state reconstruction, model-fitting, simulation of phylogenies and data, and multivariate analysis. There are a broad range of plotting methods for phylogenies and comparative data which include, but are not restricted to, methods for mapping trait evolution on trees, for projecting trees into phenotypic space or a geographic map, and for visualizing correlated speciation between trees. Finally, there are a number of functions for reading, writing, analyzing, inferring, simulating, and manipulating phylogenetic trees and comparative data not covered by other packages. For instance, there are functions for randomly or non-randomly attaching species or clades to a phylogeny, for estimating supertrees or consensus phylogenies from a set, for simulating trees and phylogenetic data under a range of models, and for a wide variety of other manipulations and analyses that phylogenetic biologists might find useful in their research.
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2025-09-25 |
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hugo
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public |
The extended version of the Hugo static site generator – the world's fastest framework for building websites.
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2025-09-25 |
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act-atmos
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public |
Python library for working with atmospheric time-series by n-dimension datasets
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2025-09-25 |
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at-spi2-core
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public |
D-Bus-based implementation of AT-SPI accessibility framework
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2025-09-25 |
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arelle-release
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public |
Arelle is an end-to-end open source XBRL platform, which provides the XBRL community with an easy to use set of tools. It supports XBRL and its extension features in an extensible manner. It does this in a compact yet robust framework that can be used as a desktop application and can be integrated with other applications and languages utilizing its web service.
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2025-09-25 |
