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r-bigstep
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public |
Selecting linear and generalized linear models for large data sets using modified stepwise procedure and modern selection criteria (like modifications of Bayesian Information Criterion). Selection can be performed on data which exceed RAM capacity.
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2025-04-22 |
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r-stapler
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public |
An implementation of Simultaneous Truth and Performance Level Estimation (STAPLE) <doi:10.1109/TMI.2004.828354>. This method is used when there are multiple raters for an object, typically an image, and this method fuses these ratings into one rating. It uses an expectation-maximization method to estimate this rating and the individual specificity/sensitivity for each rater.
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2025-04-22 |
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r-gggenes
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public |
Provides a 'ggplot2' geom and helper functions for drawing gene arrow maps.
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2025-04-22 |
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r-ggconf
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public |
A flexible interface for ggplot2::theme(), potentially saving 50% of your typing.
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2025-04-22 |
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r-rly
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public |
R implementation of the common parsing tools 'lex' and 'yacc'.
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2025-04-22 |
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r-treeman
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public |
S4 class and methods for intuitive and efficient phylogenetic tree manipulation.
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2025-04-22 |
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r-ggfocus
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public |
A 'ggplot2' extension that provides tools for automatically creating scales to focus on subgroups of the data plotted without losing other information.
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2025-04-22 |
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r-gglogo
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public |
Visualize sequences in (modified) logo plots. The design choices used by these logo plots allow sequencing data to be more easily analyzed. Because it is integrated into the 'ggplot2' geom framework, these logo plots support native features such as faceting.
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2025-04-22 |
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r-treemapify
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public |
Provides 'ggplot2' geoms for drawing treemaps.
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2025-04-22 |
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r-ggfittext
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public |
Provides 'ggplot2' geoms to fit text into a box by growing, shrinking or wrapping the text.
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2025-04-22 |
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qhull
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public |
Qhull computes the convex hull
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2025-04-22 |
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deprecation-factory
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public |
Automatically write boilerplate code for many kinds of deperecations through python decorators.
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2025-04-22 |
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wabt
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public |
The WebAssembly Binary Toolkit
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2025-04-22 |
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binaryen
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public |
Compiler infrastructure and toolchain library for WebAssembly, in C++
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2025-04-22 |
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nlohmann_json
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public |
JSON for Modern C++
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2025-04-22 |
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sphinxcontrib-httpexample
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public |
Adds example directive for sphinx-contrib httpdomain.
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2025-04-22 |
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findutils
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public |
The GNU Find Utilities are the basic directory searching utilities of
the GNU operating system.
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2025-04-22 |
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ioos-tools
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public |
Misc functions for IOOS examples
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2025-04-22 |
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gwyfile
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public |
A pure Python interface to reading and writing `Gwyddion <hhttp://www.gwyddion.net/>`_. files.
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2025-04-22 |
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srm
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public |
srm is a secure replacement for rm
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2025-04-22 |
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pytest-icdiff
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public |
use icdiff for better error messages in pytest assertions
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2025-04-22 |
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icdiff
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public |
improved colored diff
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2025-04-22 |
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r-cvauc
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public |
This package contains various tools for working with and evaluating cross-validated area under the ROC curve (AUC) estimators. The primary functions of the package are ci.cvAUC and ci.pooled.cvAUC, which report cross-validated AUC and compute confidence intervals for cross-validated AUC estimates based on influence curves for i.i.d. and pooled repeated measures data, respectively. One benefit to using influence curve based confidence intervals is that they require much less computation time than bootstrapping methods. The utility functions, AUC and cvAUC, are simple wrappers for functions from the ROCR package.
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2025-04-22 |
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r-genetics
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public |
Classes and methods for handling genetic data. Includes classes to represent genotypes and haplotypes at single markers up to multiple markers on multiple chromosomes. Function include allele frequencies, flagging homo/heterozygotes, flagging carriers of certain alleles, estimating and testing for Hardy-Weinberg disequilibrium, estimating and testing for linkage disequilibrium, ...
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2025-04-22 |
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r-unireg
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public |
Univariate spline regression. It is possible to add the shape constraint of unimodality and predefined or self-defined penalties on the B-spline coefficients.
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2025-04-22 |
