Package Name | Access | Summary | Updated |
---|---|---|---|

r-liblinear | public | A wrapper around the LIBLINEAR C/C++ library for machine learning. | 2019-07-20 |

r-kriging | public | Simple and highly optimized ordinary kriging algorithm to plot geographical data | 2019-07-20 |

r-lokern | public | Kernel regression smoothing with adaptive local or global plug-in bandwidth selection. | 2019-07-20 |

gdal | public | GDAL is a translator library for raster and vector geospatial data formats that is released under an X/MIT style Open Source license by the Open Source Geospatial Foundation. | 2019-07-20 |

libgdal | public | The Geospatial Data Abstraction Library (GDAL) | 2019-07-20 |

r-landscapemetrics | public | Calculates landscape metrics for categorical landscape patterns in a tidy workflow. 'landscapemetrics' reimplements the most common metrics from 'FRAGSTATS' (<https://www.umass.edu/landeco/research/fragstats/fragstats.html>) and new ones from the current literature on landscape metrics. This package supports 'raster' spatial objects and takes RasterLayer, RasterStacks, RasterBricks or lists of RasterLayer from the 'raster' package as input arguments. It further provides utility functions to visualize patches, select metrics and building blocks to develop new metrics. | 2019-07-20 |

r-lime | public | When building complex models, it is often difficult to explain why the model should be trusted. While global measures such as accuracy are useful, they cannot be used for explaining why a model made a specific prediction. 'lime' (a port of the 'lime' 'Python' package) is a method for explaining the outcome of black box models by fitting a local model around the point in question an perturbations of this point. The approach is described in more detail in the article by Ribeiro et al. (2016) <arXiv:1602.04938>. | 2019-07-20 |

r-labdsv | public | A variety of ordination and community analyses useful in analysis of data sets in community ecology. Includes many of the common ordination methods, with graphical routines to facilitate their interpretation, as well as several novel analyses. | 2019-07-20 |

r-lhs | public | Provides a number of methods for creating and augmenting Latin Hypercube Samples. | 2019-07-20 |

r-logistf | public | Fit a logistic regression model using Firth's bias reduction method, equivalent to penalization of the log-likelihood by the Jeffreys prior. Confidence intervals for regression coefficients can be computed by penalized profile likelihood. Firth's method was proposed as ideal solution to the problem of separation in logistic regression. If needed, the bias reduction can be turned off such that ordinary maximum likelihood logistic regression is obtained. | 2019-07-20 |

r-lasso2 | public | Routines and documentation for solving regression problems while imposing an L1 constraint on the estimates, based on the algorithm of Osborne et al. (1998). | 2019-07-20 |

r-loe | public | Local Ordinal embedding (LOE) is one of graph embedding methods for unweighted graphs. | 2019-07-20 |

r-linkcomm | public | Link communities reveal the nested and overlapping structure in networks, and uncover the key nodes that form connections to multiple communities. linkcomm provides a set of tools for generating, visualizing, and analysing link communities in networks of arbitrary size and type. The linkcomm package also includes tools for generating, visualizing, and analysing Overlapping Cluster Generator (OCG) communities. | 2019-07-20 |

r-lobstr | public | A set of tools for inspecting and understanding R data structures inspired by str(). Includes ast() for visualizing abstract syntax trees, ref() for showing shared references, cst() for showing call stack trees, and obj_size() for computing object sizes. | 2019-07-20 |

r-log4r | public | The log4r package is meant to provide a fast, lightweight, object-oriented approach to logging in R based on the widely-emulated 'log4j' system and etymology. | 2019-07-20 |

r-logicreg | public | Routines for fitting Logic Regression models. Logic Regression is described in Ruczinski, Kooperberg, and LeBlanc (2003) <DOI:10.1198/1061860032238>. Monte Carlo Logic Regression is described in and Kooperberg and Ruczinski (2005) <DOI:10.1002/gepi.20042>. | 2019-07-20 |

r-logspline | public | Contains routines for logspline density estimation. The function oldlogspline() uses the same algorithm as the logspline package version 1.0.x; i.e. the Kooperberg and Stone (1992) algorithm (with an improved interface). The recommended routine logspline() uses an algorithm from Stone et al (1997) <DOI:10.1214/aos/1031594728>. | 2019-07-20 |

r-lpsolveapi | public | The lpSolveAPI package provides an R interface to 'lp_solve', a Mixed Integer Linear Programming (MILP) solver with support for pure linear, (mixed) integer/binary, semi-continuous and special ordered sets (SOS) models. | 2019-07-20 |

r-lahman | public | Provides the tables from the 'Sean Lahman Baseball Database' as a set of R data.frames. It uses the data on pitching, hitting and fielding performance and other tables from 1871 through 2018, as recorded in the 2019 version of the database. Documentation examples show how many baseball questions can be investigated. | 2019-07-20 |

r-lassopv | public | Estimate the p-values for predictors x against target variable y in lasso regression, using the regularization strength when each predictor enters the active set of regularization path for the first time as the statistic. This is based on the assumption that predictors (of the same variance) that (first) become active earlier tend to be more significant. Three null distributions are supported: normal and spherical, which are computed separately for each predictor and analytically under approximation, which aims at efficiency and accuracy for small p-values. | 2019-07-20 |

r-lemon | public | Functions for working with legends and axis lines of 'ggplot2', facets that repeat axis lines on all panels, and some 'knitr' extensions. | 2019-07-20 |

r-lim | public | Functions that read and solve linear inverse problems (food web problems, linear programming problems). These problems find solutions to linear or quadratic functions: min or max (f(x)), where f(x) = ||Ax-b||^2 or f(x) = sum(ai*xi) subject to equality constraints Ex=f and inequality constraints Gx>=h. Uses package limSolve. | 2019-07-20 |

r-liftr | public | Persistent reproducible reporting by containerization of R Markdown documents. | 2019-07-20 |

r-lle | public | LLE is a non-linear algorithm for mapping high-dimensional data into a lower dimensional (intrinsic) space. This package provides the main functions to performs the LLE alogrithm including some enhancements like subset selection, calculation of the intrinsic dimension etc. | 2019-07-20 |

r-logging | public | logging is a pure R package that implements the ubiquitous log4j package. | 2019-07-20 |

ifcopenshell | public | IfcOpenShell is a library to support the IFC file format | 2019-07-20 |

boost-cpp | public | Free peer-reviewed portable C++ source libraries. | 2019-07-20 |

r-markovchain | public | Functions and S4 methods to create and manage discrete time Markov chains more easily. In addition functions to perform statistical (fitting and drawing random variates) and probabilistic (analysis of their structural proprieties) analysis are provided. | 2019-07-20 |

r-maldiquant | public | A complete analysis pipeline for matrix-assisted laser desorption/ionization-time-of-flight (MALDI-TOF) and other two-dimensional mass spectrometry data. In addition to commonly used plotting and processing methods it includes distinctive features, namely baseline subtraction methods such as morphological filters (TopHat) or the statistics-sensitive non-linear iterative peak-clipping algorithm (SNIP), peak alignment using warping functions, handling of replicated measurements as well as allowing spectra with different resolutions. | 2019-07-20 |

r-matching | public | Provides functions for multivariate and propensity score matching and for finding optimal balance based on a genetic search algorithm. A variety of univariate and multivariate metrics to determine if balance has been obtained are also provided. | 2019-07-20 |

r-maptpx | public | Posterior maximization for topic models (LDA) in text analysis, as described in Taddy (2012) `on estimation and selection for topic models'. Previous versions of this code were included as part of the textir package. If you want to take advantage of openmp parallelization, uncomment the relevant flags in src/MAKEVARS before compiling. | 2019-07-20 |

r-memuse | public | How much ram do you need to store a 100,000 by 100,000 matrix? How much ram is your current R session using? How much ram do you even have? Learn the scintillating answer to these and many more such questions with the 'memuse' package. | 2019-07-20 |

r-mess | public | A mixed collection of useful and semi-useful diverse statistical functions, some of which may even be referenced in The R Primer book. | 2019-07-20 |

r-mcmcglmm | public | MCMC Generalised Linear Mixed Models. | 2019-07-20 |

r-metarnaseq | public | Implementation of two p-value combination techniques (inverse normal and Fisher methods). A vignette is provided to explain how to perform a meta-analysis from two independent RNA-seq experiments. | 2019-07-20 |

r-metr | public | Many useful functions and extensions for dealing with meteorological data in the tidy data framework. Extends 'ggplot2' for better plotting of scalar and vector fields and provides commonly used analysis methods in the atmospheric sciences. | 2019-07-20 |

r-lsr | public | A collection of tools intended to make introductory statistics easier to teach, including wrappers for common hypothesis tests and basic data manipulation. It accompanies Navarro, D. J. (2015). Learning Statistics with R: A Tutorial for Psychology Students and Other Beginners, Version 0.5. [Lecture notes] School of Psychology, University of Adelaide, Adelaide, Australia. ISBN: 978-1-326-18972-3. URL: http://health.adelaide.edu.au/psychology/ccs/teaching/lsr/. | 2019-07-20 |

r-mdmr | public | Allows users to conduct multivariate distance matrix regression using analytic p-values and compute measures of effect size. For details on the method, see McArtor, Lubke, & Bergeman (2017) <doi:10.1007/s11336-016-9527-8>. | 2019-07-20 |

r-meta | public | User-friendly general package providing standard methods for meta-analysis and supporting Schwarzer, Carpenter, and RÃ¼cker <DOI:10.1007/978-3-319-21416-0>, "Meta-Analysis with R" (2015): - fixed effect and random effects meta-analysis; - several plots (forest, funnel, Galbraith / radial, L'Abbe, Baujat, bubble); - statistical tests and trim-and-fill method to evaluate bias in meta-analysis; - import data from 'RevMan 5'; - prediction interval, Hartung-Knapp and Paule-Mandel method for random effects model; - cumulative meta-analysis and leave-one-out meta-analysis; - meta-regression; - generalised linear mixed models; - produce forest plot summarising several (subgroup) meta-analyses. | 2019-07-20 |

r-metap | public | The canonical way to perform meta-analysis involves using effect sizes. When they are not available this package provides a number of methods for meta-analysis of significance values including the methods of Edgington, Fisher, Lancaster, Stouffer, Tippett, and Wilkinson; a number of data-sets to replicate published results; and a routine for graphical display. | 2019-07-20 |

r-medicalrisk | public | Generates risk estimates and comorbidity flags from ICD-9-CM codes available in administrative medical datasets. The package supports the Charlson Comorbidity Index, the Elixhauser Comorbidity classification, the Revised Cardiac Risk Index, and the Risk Stratification Index. Methods are table-based, fast, and use the 'plyr' package, so parallelization is possible for large jobs. Also includes a sample of real ICD-9 data for 100 patients from a publicly available dataset. | 2019-07-20 |

r-mcl | public | Contains the Markov cluster algorithm (MCL) for identifying clusters in networks and graphs. The algorithm simulates random walks on a (n x n) matrix as the adjacency matrix of a graph. It alternates an expansion step and an inflation step until an equilibrium state is reached. | 2019-07-20 |

r-matrix.utils | public | Implements data manipulation methods such as cast, aggregate, and merge/join for Matrix and matrix-like objects. | 2019-07-20 |

r-matrixeqtl | public | Matrix eQTL is designed for fast eQTL analysis on large datasets. Matrix eQTL can test for association between genotype and gene expression using linear regression with either additive or ANOVA genotype effects. The models can include covariates to account for factors as population stratification, gender, and clinical variables. It also supports models with heteroscedastic and/or correlated errors, false discovery rate estimation and separate treatment of local (cis) and distant (trans) eQTLs. | 2019-07-20 |

r-mcbiopi | public | Computes the prime implicants or a minimal disjunctive normal form for a logic expression presented by a truth table or a logic tree. Has been particularly developed for logic expressions resulting from a logic regression analysis, i.e. logic expressions typically consisting of up to 16 literals, where the prime implicants are typically composed of a maximum of 4 or 5 literals. | 2019-07-20 |

r-mefa | public | A framework package aimed to provide standardized computational environment for specialist work via object classes to represent the data coded by samples, taxa and segments (i.e. subpopulations, repeated measures). It supports easy processing of the data along with cross tabulation and relational data tables for samples and taxa. An object of class `mefa' is a project specific compendium of the data and can be easily used in further analyses. Methods are provided for extraction, aggregation, conversion, plotting, summary and reporting of `mefa' objects. Reports can be generated in plain text or LaTeX format. Vignette contains worked examples. | 2019-07-20 |

r-margins | public | An R port of Stata's 'margins' command, which can be used to calculate marginal (or partial) effects from model objects. | 2019-07-20 |

r-maptree | public | Functions with example data for graphing, pruning, and mapping models from hierarchical clustering, and classification and regression trees. | 2019-07-20 |

r-magicaxis | public | Functions to make useful (and pretty) plots for scientific plotting. Additional plotting features are added for base plotting, with particular emphasis on making attractive log axis plots. | 2019-07-20 |

r-mapplots | public | Create simple maps; add sub-plots like pie plots to a map or any other plot; format, plot and export gridded data. The package was developed for displaying fisheries data but most functions can be used for more generic data visualisation. | 2019-07-20 |

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