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r-chorddiag
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public |
R interface to D3 chord diagrams.
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2025-09-22 |
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certbot-dns-google
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public |
Google Cloud DNS Authenticator plugin for Certbot
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2025-09-22 |
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r-tca
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public |
Tensor Composition Analysis (TCA) allows the deconvolution of two-dimensional data (features by observations) coming from a mixture of heterogeneous sources into a three-dimensional matrix of signals (features by observations by sources). The TCA framework further allows to test the features in the data for different statistical relations with an outcome of interest while modeling source-specific effects; particularly, it allows to look for statistical relations between source-specific signals and an outcome. For example, TCA can deconvolve bulk tissue-level DNA methylation data (methylation sites by individuals) into a three-dimensional tensor of cell-type-specific methylation levels for each individual (i.e. methylation sites by individuals by cell types) and it allows to detect cell-type-specific statistical relations (associations) with phenotypes. For more details see Rahmani et al. (2019) <DOI:10.1038/s41467-019-11052-9>.
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2025-09-22 |
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certbot-dns-linode
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public |
Linode DNS Authenticator plugin for Certbot
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2025-09-22 |
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cspice
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public |
NASA ancillary information system
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2025-09-22 |
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r-secretsprovider
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public |
Facilitates secret management by storing credentials in a dedicated file, keeping them out of your code base. The secrets are stored without encryption. This package is compatible with secrets stored by the 'SecretsProvider' 'Python' package <https://pypi.org/project/SecretsProvider/>.
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2025-09-22 |
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r-diffdf
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public |
Functions for comparing two data.frames against each other. The core functionality is to provide a detailed breakdown of any differences between two data.frames as well as providing utility functions to help narrow down the source of problems and differences.
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2025-09-22 |
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r-cleanr
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public |
Check your R code for some of the most common layout flaws. Many tried to teach us how to write code less dreadful, be it implicitly as B. W. Kernighan and D. M. Ritchie (1988) <ISBN:0-13-110362-8> in 'The C Programming Language' did, be it explicitly as R.C. Martin (2008) <ISBN:0-13-235088-2> in 'Clean Code: A Handbook of Agile Software Craftsmanship' did. So we should check our code for files too long or wide, functions with too many lines, too wide lines, too many arguments or too many levels of nesting. Note: This is not a static code analyzer like pylint or the like. Checkout <https://cran.r-project.org/package=lintr> instead.
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2025-09-22 |
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certbot-dns-sakuracloud
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public |
Sakura Cloud DNS Authenticator plugin for Certbot
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2025-09-22 |
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monai
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public |
AI Toolkit for Healthcare Imaging
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2025-09-22 |
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r-metaskat
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public |
Functions for Meta-analysis Burden test, SKAT and SKAT-O by Lee et al. (2013) <doi:10.1016/j.ajhg.2013.05.010>. These methods use summary-level score statistics to carry out gene-based meta-analysis for rare variants.
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2025-09-22 |
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fakeredis
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public |
Fake implementation of redis API (redis-py) for testing purposes.
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2025-09-22 |
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pytorch_cluster
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public |
PyTorch Extension Library of Optimized Graph Cluster Algorithms
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2025-09-22 |
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r-corrr
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public |
A tool for exploring correlations. It makes it possible to easily perform routine tasks when exploring correlation matrices such as ignoring the diagonal, focusing on the correlations of certain variables against others, or rearranging and visualising the matrix in terms of the strength of the correlations.
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2025-09-22 |
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r-rodbc
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public |
An ODBC database interface.
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2025-09-22 |
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r-skmeans
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public |
Algorithms to compute spherical k-means partitions. Features several methods, including a genetic and a fixed-point algorithm and an interface to the CLUTO vcluster program.
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2025-09-22 |
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aihwkit
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public |
A toolkit for exploring and using the capabilities of in-memory computing devices for AI.
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2025-09-22 |
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aihwkit-gpu
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public |
A toolkit for exploring and using the capabilities of in-memory computing devices for AI.
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2025-09-22 |
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r-snpassoc
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public |
This package carries out most common analysis when performing whole genome association studies. These analyses include descriptive statistics and exploratory analysis of missing values, calculation of Hardy-Weinberg equilibrium, analysis of association based on generalized linear models (either for quantitative or binary traits), and analysis of multiple SNPs (haplotype and epistasis analysis). Permutation test and related tests (sum statistic and truncated product) are also implemented. Max-statistic and genetic risk-allele score exact distributions are also possible to be estimated.
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2025-09-22 |
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r-icluster
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public |
Integrative clustering of multiple genomic data types using a joint latent variable model.
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2025-09-22 |
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r-mongolite
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public |
High-performance MongoDB client based on 'mongo-c-driver' and 'jsonlite'. Includes support for aggregation, indexing, map-reduce, streaming, encryption, enterprise authentication, and GridFS.
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2025-09-22 |
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r-bigrquery
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public |
Easily talk to Google's 'BigQuery' database from R.
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2025-09-22 |
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r-secret
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public |
Allow sharing sensitive information, for example passwords, 'API' keys, etc., in R packages, using public key cryptography.
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2025-09-22 |
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r-dssat
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public |
The purpose of this package is to provide a comprehensive R interface to the Decision Support System for Agrotechnology Transfer Cropping Systems Model (DSSAT-CSM; see <https://dssat.net> for more information). The package provides cross-platform functions to read and write input files, run DSSAT-CSM, and read output files.
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2025-09-22 |
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r-kpmt
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public |
Functions that implement the known population median test.
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2025-09-22 |
