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ultralytics
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public |
Ultralytics YOLO for SOTA object detection, multi-object tracking, instance segmentation, pose estimation and image classification.
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2025-09-23 |
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r-platetools
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public |
Collection of functions for working with multi-well microtitre plates, mainly 96, 384 and 1536 well plates.
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2025-09-23 |
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r-fivethirtyeight
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public |
Datasets and code published by the data journalism website 'FiveThirtyEight' available at <https://github.com/fivethirtyeight/data>. Note that while we received guidance from editors at 'FiveThirtyEight', this package is not officially published by 'FiveThirtyEight'.
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2025-09-23 |
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r-rbison
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public |
Interface to the 'USGS' 'BISON' (<https://bison.usgs.gov/>) API, a 'database' for species occurrence data. Data comes from species in the United States from participating data providers. You can get data via 'taxonomic' and location based queries. A simple function is provided to help visualize data.
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2025-09-23 |
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r-explore
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public |
Interactive data exploration with one line of code or use an easy to remember set of tidy functions for exploratory data analysis. Introduces three main verbs. explore() to graphically explore a variable or table, describe() to describe a variable or table and report() to create an automated report.
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2025-09-23 |
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r-upsetjs
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public |
'UpSet.js' is a re-implementation of 'UpSetR' to create interactive set visualizations for more than three sets. This is a 'htmlwidget' wrapper around the 'JavaScript' library 'UpSet.js'.
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2025-09-23 |
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r-ppclust
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public |
Partitioning clustering divides the objects in a data set into non-overlapping subsets or clusters by using the prototype-based probabilistic and possibilistic clustering algorithms. This package covers a set of the functions for Fuzzy C-Means (Bezdek, 1974) <doi:10.1080/01969727308546047>, Possibilistic C-Means (Krishnapuram & Keller, 1993) <doi:10.1109/91.227387>, Possibilistic Fuzzy C-Means (Pal et al, 2005) <doi:10.1109/TFUZZ.2004.840099>, Possibilistic Clustering Algorithm (Yang et al, 2006) <doi:10.1016/j.patcog.2005.07.005>, Possibilistic C-Means with Repulsion (Wachs et al, 2006) <doi:10.1007/3-540-31662-0_6> and the other variants of hard and soft clustering algorithms. The cluster prototypes and membership matrices required by these partitioning algorithms are initialized with different initialization techniques that are available in the package 'inaparc'. As the distance metrics, not only the Euclidean distance but also a set of the commonly used distance metrics are available to use with some of the algorithms in the package.
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2025-09-23 |
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r-tcpl
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public |
A set of tools for processing and modeling high-throughput and high-content chemical screening data. The package was developed for the the chemical screening data generated by the US EPA ToxCast program, but can be used for diverse chemical screening efforts.
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2025-09-23 |
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r-icebox
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public |
Implements Individual Conditional Expectation (ICE) plots, a tool for visualizing the model estimated by any supervised learning algorithm. ICE plots refine Friedman's partial dependence plot by graphing the functional relationship between the predicted response and a covariate of interest for individual observations. Specifically, ICE plots highlight the variation in the fitted values across the range of a covariate of interest, suggesting where and to what extent they may exist.
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2025-09-23 |
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r-flatxml
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public |
On import, the XML information is converted to a dataframe that reflects the hierarchical XML structure. Intuitive functions allow to navigate within this transparent XML data structure (without any knowledge of 'XPath'). 'flatXML' also provides tools to extract data from the XML into a flat dataframe that can be used to perform statistical operations. It also supports converting dataframes to XML.
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2025-09-23 |
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pot
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public |
Python Optimal Transport library
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2025-09-23 |
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pogo
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public |
GUI application for generating Tango projects
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2025-09-23 |
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madoka
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public |
Memory-efficient CountMin Sketch key-value structure (based on Madoka C++ library)
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2025-09-23 |
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r-gifski
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public |
Multi-threaded GIF encoder written in Rust: <https://gif.ski/>. Converts images to GIF animations using pngquant's efficient cross-frame palettes and temporal dithering with thousands of colors per frame.
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2025-09-23 |
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r-miscf
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public |
Various functions for random number generation, density estimation, classification, curve fitting, and spatial data analysis.
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2025-09-23 |
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r-geoarrow
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public |
Provides extension types and conversions to between R-native object types and 'Arrow' columnar types. This includes integration among the 'arrow', 'nanoarrow', 'sf', and 'wk' packages such that spatial metadata is preserved wherever possible. Extension type implementations ensure first-class geometry data type support in the 'arrow' and 'nanoarrow' packages.
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2025-09-23 |
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r-msgps
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public |
This package computes the degrees of freedom of the lasso, elastic net, generalized elastic net and adaptive lasso based on the generalized path seeking algorithm. The optimal model can be selected by model selection criteria including Mallows' Cp, bias-corrected AIC (AICc), generalized cross validation (GCV) and BIC.
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2025-09-23 |
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r-stpphawkes
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Estimation of model parameters for marked Hawkes process. Accounts for missing data in the estimation of the parameters. Technical details found in (Tucker et al., 2019 <DOI:10.1016/j.spasta.2018.12.004>).
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2025-09-23 |
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r-treebase
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Interface to the API for 'TreeBASE' <http://treebase.org> from 'R.' 'TreeBASE' is a repository of user-submitted phylogenetic trees (of species, population, or genes) and the data used to create them.
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2025-09-23 |
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r-emcluster
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public |
EM algorithms and several efficient initialization methods for model-based clustering of finite mixture Gaussian distribution with unstructured dispersion in both of unsupervised and semi-supervised learning.
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2025-09-23 |
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r-ontologysimilarity
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public |
Functions for calculating semantic similarities between ontological terms or sets of ontological terms based on term information content and assessing statistical significance of similarity in the context of a collection of sets of ontological terms.
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2025-09-23 |
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r-shinypanel
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public |
Add shiny inputs with one or more inline buttons that grow and shrink with inputs. Also add tool tips to input buttons and styling and messages for input validation.
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2025-09-23 |
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r-ggmuller
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public |
Create plots that combine a phylogeny and frequency dynamics. Phylogenetic input can be a generic adjacency matrix or a tree of class "phylo". Inspired by similar plots in publications of the labs of RE Lenski and JE Barrick. Named for HJ Muller (who popularised such plots) and H Wickham (whose code this package exploits).
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2025-09-23 |
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r-wrassp
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A wrapper around Michel Scheffers's 'libassp' (<http://libassp.sourceforge.net/>). The 'libassp' (Advanced Speech Signal Processor) library aims at providing functionality for handling speech signal files in most common audio formats and for performing analyses common in phonetic science/speech science. This includes the calculation of formants, fundamental frequency, root mean square, auto correlation, a variety of spectral analyses, zero crossing rate, filtering etc. This wrapper provides R with a large subset of 'libassp's signal processing functions and provides them to the user in a (hopefully) user-friendly manner.
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2025-09-23 |
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r-namedropr
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Provides 'visual citations' containing the metadata of a scientific paper and a 'QR' code. A 'visual citation' is a banner containing title, authors, journal and year of a publication. This package can create such banners based on 'BibTeX' and 'BibLaTeX' references and includes a QR code pointing to the 'DOI'. The resulting HTML object or PNG image can be included in a presentation to point the audience to good resources for further reading. Styling is possible via predefined designs or via custom 'CSS'. This package is not intended as replacement for proper reference manager packages, but a tool to enrich scientific presentation slides.
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2025-09-23 |
