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r-inlinedocs
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public |
Generates Rd files from R source code with comments. The main features of the default syntax are that (1) docs are defined in comments near the relevant code, (2) function argument names are not repeated in comments, and (3) examples are defined in R code, not comments. It is also easy to define a new syntax.
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2025-04-22 |
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r-idr
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public |
This is a package for estimating the copula mixture model and plotting correspondence curves in "Measuring reproducibility of high-throughput experiments" (2011), Annals of Applied Statistics, Vol. 5, No. 3, 1752-1779, by Li, Brown, Huang, and Bickel
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2025-04-22 |
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r-idpmisc
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public |
The IDPmisc package contains different high-level graphics functions for displaying
large datasets, displaying circular data in a very flexible way, finding local maxima,
brewing color ramps, drawing nice arrows, zooming 2D-plots, creating figures with
differently colored margin and plot region. In addition, the package contains auxiliary
functions for data manipulation like omitting observations with irregular values
or selecting data by logical vectors, which include NAs. Other functions are especially
useful in spectroscopy and analyses of environmental data: robust baseline fitting,
finding peaks in spectra.
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2025-04-22 |
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r-gsmoothr
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public |
Tools rewritten in C for various smoothing tasks
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2025-04-22 |
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r-gsalib
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public |
This package contains utility functions used by the Genome Analysis Toolkit (GATK) to load tables and plot data. The GATK is a toolkit for variant discovery in high-throughput sequencing data.
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2025-04-22 |
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r-grimport
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public |
Functions for converting, importing, and drawing PostScript pictures in R plots.
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2025-04-22 |
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r-gpseq
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public |
Some functions for modeling sequence read counts as a generalized poisson model and to use this model for detecting differentially expressed genes in different conditions and differentially spliced exons.
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2025-04-22 |
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r-gprofiler
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public |
Functional enrichment analysis, gene identifier conversion and mapping homologous genes across related organisms via the 'g:Profiler' toolkit (<https://biit.cs.ut.ee/gprofiler/>).
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2025-04-22 |
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r-giant
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public |
Toolbox for various enrichment analysis methods and quantification of uncertainty of gene sets.
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2025-04-22 |
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r-ggthemes
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public |
Some extra themes, geoms, and scales for 'ggplot2'. Provides 'ggplot2' themes and scales that replicate the look of plots by Edward Tufte, Stephen Few, 'Fivethirtyeight', 'The Economist', 'Stata', 'Excel', and 'The Wall Street Journal', among others. Provides 'geoms' for Tufte's box plot and range frame.
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2025-04-22 |
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r-genabel.data
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public |
GenABEL.data package consists of a data set used by GenABEL functions
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2025-04-22 |
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r-gdtools
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public |
Useful tools for writing vector graphics devices.
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2025-04-22 |
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r-gbm
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public |
An implementation of extensions to Freund and Schapire's AdaBoost algorithm and Friedman's gradient boosting machine. Includes regression methods for least squares, absolute loss, t-distribution loss, quantile regression, logistic, multinomial logistic, Poisson, Cox proportional hazards partial likelihood, AdaBoost exponential loss, Huberized hinge loss, and Learning to Rank measures (LambdaMart). Originally developed by Greg Ridgeway.
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2025-04-22 |
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r-d3heatmap
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public |
Create interactive heat maps that are usable from the R console, in the 'RStudio' viewer pane, in 'R Markdown' documents, and in 'Shiny' apps. Hover the mouse pointer over a cell to show details, drag a rectangle to zoom, and click row/column labels to highlight.
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2025-04-22 |
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xtl
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public |
The xtensor-stack tools library
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2025-04-22 |
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r-r2html
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public |
Includes HTML function and methods to write in an HTML file. Thus, making HTML reports is easy. Includes a function that allows redirection on the fly, which appears to be very useful for teaching purpose, as the student can keep a copy of the produced output to keep all that he did during the course. Package comes with a vignette describing how to write HTML reports for statistical analysis. Finally, a driver for 'Sweave' allows to parse HTML flat files containing R code and to automatically write the corresponding outputs (tables and graphs).
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2025-04-22 |
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r-r.devices
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public |
Functions for creating plots and image files in a unified way regardless of output format (EPS, PDF, PNG, SVG, TIFF, WMF, etc.). Default device options as well as scales and aspect ratios are controlled in a uniform way across all device types. Switching output format requires minimal changes in code. This package is ideal for large-scale batch processing, because it will never leave open graphics devices or incomplete image files behind, even on errors or user interrupts.
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2025-04-22 |
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r-fdrtool
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public |
Estimates both tail area-based false discovery rates (Fdr) as well as local false discovery rates (fdr) for a variety of null models (p-values, z-scores, correlation coefficients, t-scores). The proportion of null values and the parameters of the null distribution are adaptively estimated from the data. In addition, the package contains functions for non-parametric density estimation (Grenander estimator), for monotone regression (isotonic regression and antitonic regression with weights), for computing the greatest convex minorant (GCM) and the least concave majorant (LCM), for the half-normal and correlation distributions, and for computing empirical higher criticism (HC) scores and the corresponding decision threshold.
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2025-04-22 |
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r-som
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public |
Self-Organizing Map (with application in gene clustering).
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2025-04-22 |
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r-signal
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public |
A set of signal processing functions originally written for 'Matlab' and 'Octave'. Includes filter generation utilities, filtering functions, resampling routines, and visualization of filter models. It also includes interpolation functions.
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2025-04-22 |
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r-rsm
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public |
Provides functions to generate response-surface designs, fit first- and second-order response-surface models, make surface plots, obtain the path of steepest ascent, and do canonical analysis. A good reference on these methods is Chapter 10 of Wu, C-F J and Hamada, M (2009) "Experiments: Planning, Analysis, and Parameter Design Optimization" ISBN 978-0-471-69946-0.
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2025-04-22 |
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r-rcpptoml
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public |
The configuration format defined by 'TOML' (which expands to "Tom's Obvious Markup Language") specifies an excellent format (described at <https://toml.io/en/>) suitable for both human editing as well as the common uses of a machine-readable format. This package uses 'Rcpp' to connect the 'cpptoml' parser written by Chase Geigle (in C++11) to R.
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2025-04-22 |
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r-rcppparallel
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public |
High level functions for parallel programming with 'Rcpp'. For example, the 'parallelFor()' function can be used to convert the work of a standard serial "for" loop into a parallel one and the 'parallelReduce()' function can be used for accumulating aggregate or other values.
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2025-04-22 |
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incremental
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public |
Incremental is a small library that versions your Python projects.
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2025-04-22 |
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hyperlink
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public |
Immutable, Pythonic, correct URLs.
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2025-04-22 |
