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r-seriation
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public |
Infrastructure for ordering objects with an implementation of several seriation/sequencing/ordination techniques to reorder matrices, dissimilarity matrices, and dendrograms. Also provides (optimally) reordered heatmaps, color images and clustering visualizations like dissimilarity plots, and visual assessment of cluster tendency plots (VAT and iVAT).
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2025-04-22 |
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r-loo
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public |
Efficient approximate leave-one-out cross-validation (LOO) for Bayesian models fit using Markov chain Monte Carlo. The approximation uses Pareto smoothed importance sampling (PSIS), a new procedure for regularizing importance weights. As a byproduct of the calculations, we also obtain approximate standard errors for estimated predictive errors and for the comparison of predictive errors between models. The package also provides methods for using stacking and other model weighting techniques to average Bayesian predictive distributions.
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2025-04-22 |
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r-shinystan
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public |
A graphical user interface for interactive Markov chain Monte Carlo (MCMC) diagnostics and plots and tables helpful for analyzing a posterior sample. The interface is powered by the 'Shiny' web application framework from 'RStudio' and works with the output of MCMC programs written in any programming language (and has extended functionality for 'Stan' models fit using the 'rstan' and 'rstanarm' packages).
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2025-04-22 |
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r-gclus
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public |
Orders panels in scatterplot matrices and parallel coordinate displays by some merit index. Package contains various indices of merit, ordering functions, and enhanced versions of pairs and parcoord which color panels according to their merit level.
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2025-04-22 |
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regionmask
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public |
plotting and creation of masks of spatial regions
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2025-04-22 |
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r-qap
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public |
Implements heuristics for the Quadratic Assignment Problem (QAP). Currently only a simulated annealing heuristic is available.
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2025-04-22 |
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r-assotester
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public |
R package with statistical tests and methods for genetic association studies with emphasis on rare variants and binary (dichotomous) traits
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2025-04-22 |
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r-rstantools
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public |
Provides various tools for developers of R packages interfacing with 'Stan' <https://mc-stan.org>, including functions to set up the required package structure, S3 generics and default methods to unify function naming across 'Stan'-based R packages, and vignettes with recommendations for developers.
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2025-04-22 |
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r-imbalance
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public |
Class imbalance usually damages the performance of classifiers. Thus, it is important to treat data before applying a classifier algorithm. This package includes recent resampling algorithms in the literature: (Barua et al. 2014) <doi:10.1109/tkde.2012.232>; (Das et al. 2015) <doi:10.1109/tkde.2014.2324567>, (Zhang et al. 2014) <doi:10.1016/j.inffus.2013.12.003>; (Gao et al. 2014) <doi:10.1016/j.neucom.2014.02.006>; (Almogahed et al. 2014) <doi:10.1007/s00500-014-1484-5>. It also includes an useful interface to perform oversampling.
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2025-04-22 |
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genesis-pyapi
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public |
Python API for the Genesis platform.
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2025-04-22 |
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audi
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public |
C++ header only library: Algebra of Taylor truncated polynomials and a few algorithms useful for its applications (e.g. Automated differentiation, Differential Intelligence, Taylor Models, etc.)
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2025-04-22 |
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r-c50
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public |
C5.0 decision trees and rule-based models for pattern recognition that extend the work of Quinlan (1993, ISBN:1-55860-238-0).
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2025-04-22 |
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r-yaimpute
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public |
Performs nearest neighbor-based imputation using one or more alternative approaches to processing multivariate data. These include methods based on canonical correlation analysis, canonical correspondence analysis, and a multivariate adaptation of the random forest classification and regression techniques of Leo Breiman and Adele Cutler. Additional methods are also offered. The package includes functions for comparing the results from running alternative techniques, detecting imputation targets that are notably distant from reference observations, detecting and correcting for bias, bootstrapping and building ensemble imputations, and mapping results.
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2025-04-22 |
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r-formula.tools
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public |
These utilities facilitate the programmatic manipulations of formulas, expressions, calls, assignments and other R language objects. These objects all share the same structure: a left-hand side, operator and right-hand side. This packages provides methods for accessing and modifying this structures as well as extracting and replacing names and symbols from these objects.
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2025-04-22 |
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r-operator.tools
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public |
Provides a collection of utilities that allow programming with R's operators. Routines allow classifying operators, translating to and from an operator and its underlying function, and inverting some operators (e.g. comparison operators), etc. All methods can be extended to custom infix operators.
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2025-04-22 |
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django-controlcenter
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public |
Set of widgets to build dashboards for Django projects
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2025-04-22 |
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r-spatest
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public |
Performs score test using saddlepoint approximation to estimate the null distribution. Also prepares summary statistics for meta-analysis and performs meta-analysis to combine multiple association results. For the latest version, please check <https://github.com/leeshawn/SPAtest>.
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2025-04-22 |
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django-pkgconf
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public |
Yet another application settings helper
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2025-04-22 |
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shedsidewinder
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public |
Translator from beam studies into databroker
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2025-04-22 |
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r-ibd
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public |
A collection of several utility functions related to binary incomplete block designs. The package contains function to generate A- and D-efficient binary incomplete block designs with given numbers of treatments, number of blocks and block size. The package also contains function to generate an incomplete block design with specified concurrence matrix. There are functions to generate balanced treatment incomplete block designs and incomplete block designs for test versus control treatments comparisons with specified concurrence matrix. Package also allows performing analysis of variance of data and computing estimated marginal means of factors from experiments using a connected incomplete block design. Tests of hypothesis of treatment contrasts in incomplete block design set up is supported.
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2025-04-22 |
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datamash
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public |
GNU datamash is a command-line program which performs basic numeric,textual and statistical operations on input textual data files.
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2025-04-22 |
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cfgv
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public |
Validate configuration and produce human readable error messages.
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2025-04-22 |
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asammdf
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public |
ASAM MDF measurement data file parser
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2025-04-22 |
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libzip
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public |
A C library for reading, creating, and modifying zip archives.
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2025-04-22 |
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r-optimx
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public |
Provides a replacement and extension of the optim() function to call to several function minimization codes in R in a single statement. These methods handle smooth, possibly box constrained functions of several or many parameters. Note that function 'optimr()' was prepared to simplify the incorporation of minimization codes going forward. Also implements some utility codes and some extra solvers, including safeguarded Newton methods. Many methods previously separate are now included here.
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2025-04-22 |
