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ioos-tools
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public |
Misc functions for IOOS examples
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2025-04-22 |
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gwyfile
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public |
A pure Python interface to reading and writing `Gwyddion <hhttp://www.gwyddion.net/>`_. files.
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2025-04-22 |
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srm
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public |
srm is a secure replacement for rm
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2025-04-22 |
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pytest-icdiff
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public |
use icdiff for better error messages in pytest assertions
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2025-04-22 |
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icdiff
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public |
improved colored diff
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2025-04-22 |
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r-cvauc
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public |
This package contains various tools for working with and evaluating cross-validated area under the ROC curve (AUC) estimators. The primary functions of the package are ci.cvAUC and ci.pooled.cvAUC, which report cross-validated AUC and compute confidence intervals for cross-validated AUC estimates based on influence curves for i.i.d. and pooled repeated measures data, respectively. One benefit to using influence curve based confidence intervals is that they require much less computation time than bootstrapping methods. The utility functions, AUC and cvAUC, are simple wrappers for functions from the ROCR package.
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2025-04-22 |
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r-genetics
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public |
Classes and methods for handling genetic data. Includes classes to represent genotypes and haplotypes at single markers up to multiple markers on multiple chromosomes. Function include allele frequencies, flagging homo/heterozygotes, flagging carriers of certain alleles, estimating and testing for Hardy-Weinberg disequilibrium, estimating and testing for linkage disequilibrium, ...
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2025-04-22 |
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r-unireg
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public |
Univariate spline regression. It is possible to add the shape constraint of unimodality and predefined or self-defined penalties on the B-spline coefficients.
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2025-04-22 |
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r-spatialvx
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public |
Spatial forecast verification arose from verifying high-resolution forecasts, where coarser-resolution models generally are favored even when a human forecaster finds the higher-resolution model to be considerably better. Most newly proposed methods, which largely come from image analysis, computer vision, and similar, are available, with more on the way.
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2025-04-22 |
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r-sqn
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public |
Normalization based a subset of negative control probes as described in 'Subset quantile normalization using negative control features'. Wu Z, Aryee MJ, J Comput Biol. 2010 Oct;17(10):1385-95 [PMID 20976876].
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2025-04-22 |
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r-startr
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public |
Tool to automatically fetch, transform and arrange subsets of multidimensional data sets (collections of files) stored in local and/or remote file systems or servers, using multicore capabilities where possible. The tool provides an interface to perceive a collection of data sets as a single large multidimensional data array, and enables the user to request for automatic retrieval, processing and arrangement of subsets of the large array. Wrapper functions to add support for custom file formats can be plugged in/out, making the tool suitable for any research field where large multidimensional data sets are involved.
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2025-04-22 |
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r-sel
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public |
This package implements a novel method for fitting a bounded probability distribution to quantiles (for example stated by an expert), see Bornkamp and Ickstadt (2009) for details. For this purpose B-splines are used, and the density is obtained by penalized least squares based on a Brier entropy penalty. The package provides methods for fitting the distribution as well as methods for evaluating the underlying density and cdf. In addition methods for plotting the distribution, drawing random numbers and calculating quantiles of the obtained distribution are provided.
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2025-04-22 |
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r-turboem
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public |
Algorithms for accelerating the convergence of slow, monotone sequences from smooth, contraction mapping such as the EM and MM algorithms. It can be used to accelerate any smooth, linearly convergent acceleration scheme. A tutorial style introduction to this package is available in a vignette on the CRAN download page or, when the package is loaded in an R session, with vignette("turboEM").
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2025-04-22 |
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r-smoothie
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public |
Functions to smooth two-dimensional fields using FFT and the convolution theorem
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2025-04-22 |
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r-biclust
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public |
The main function biclust() provides several algorithms to find biclusters in two-dimensional data: Cheng and Church (2000, ISBN:1-57735-115-0), spectral (2003) <doi:10.1101/gr.648603>, plaid model (2005) <doi:10.1016/j.csda.2004.02.003>, xmotifs (2003) <doi:10.1142/9789812776303_0008> and bimax (2006) <doi:10.1093/bioinformatics/btl060>. In addition, the package provides methods for data preprocessing (normalization and discretisation), visualisation, and validation of bicluster solutions.
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2025-04-22 |
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r-additivitytests
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public |
Implementation of the Tukey, Mandel, Johnson-Graybill, LBI, Tusell and modified Tukey non-additivity tests.
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2025-04-22 |
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metar
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public |
python-metar is a python package that parses coded METAR weather reports.
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2025-04-22 |
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r-celestial
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Contains a number of common astronomy conversion routines, particularly the HMS and degrees schemes, which can be fiddly to convert between on mass due to the textural nature of the former. It allows users to coordinate match datasets quickly. It also contains functions for various cosmological calculations.
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2025-04-22 |
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r-umap
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Uniform manifold approximation and projection is a technique for dimension reduction. The algorithm was described by McInnes and Healy (2018) in <arXiv:1802.03426>. This package provides an interface for two implementations. One is written from scratch, including components for nearest-neighbor search and for embedding. The second implementation is a wrapper for 'python' package 'umap-learn' (requires separate installation, see vignette for more details).
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2025-04-22 |
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r-rmariadb
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Implements a 'DBI'-compliant interface to 'MariaDB' (<https://mariadb.org/>) and 'MySQL' (<https://www.mysql.com/>) databases.
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2025-04-22 |
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lightkurve
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public |
A friendly package for Kepler & TESS time series analysis in Python.
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2025-04-22 |
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oktopus
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public |
A soft-bodied, eight-armed package for beautiful inference.
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2025-04-22 |
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neurosynchro
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public |
Train and use neural networks to quickly approximate polarized synchrotron radiative transfer coefficients.
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2025-04-22 |
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ukpopulation
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public |
Download, cache, collate, filter and extrapolate UK Population estimates and projections
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2025-04-22 |
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flask_table
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public |
HTML tables for use with the Flask micro-framework
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2025-04-22 |
