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r-lasso2
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public |
Routines and documentation for solving regression problems while imposing an L1 constraint on the estimates, based on the algorithm of Osborne et al. (1998).
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2025-04-22 |
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r-mongolite
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public |
High-performance MongoDB client based on 'mongo-c-driver' and 'jsonlite'. Includes support for aggregation, indexing, map-reduce, streaming, encryption, enterprise authentication, and GridFS.
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2025-04-22 |
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r-kza
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public |
Time Series Analysis including break detection, spectral analysis, KZ Fourier Transforms.
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2025-04-22 |
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r-distrex
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Extends package 'distr' by functionals, distances, and conditional distributions.
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2025-04-22 |
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r-tkrplot
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public |
Simple mechanism for placing R graphics in a Tk widget.
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2025-04-22 |
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r-rhpcblasctl
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public |
Control the number of threads on 'BLAS' (Aka 'GotoBLAS', 'OpenBLAS', 'ACML', 'BLIS' and 'MKL'). And possible to control the number of threads in 'OpenMP'. Get a number of logical cores and physical cores if feasible.
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2025-04-22 |
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r-dppackage
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Functions to perform inference via simulation from the posterior distributions for Bayesian nonparametric and semiparametric models. Although the name of the package was motivated by the Dirichlet Process prior, the package considers and will consider other priors on functional spaces. So far, DPpackage includes models considering Dirichlet Processes, Dependent Dirichlet Processes, Dependent Poisson- Dirichlet Processes, Hierarchical Dirichlet Processes, Polya Trees, Linear Dependent Tailfree Processes, Mixtures of Triangular distributions, Random Bernstein polynomials priors and Dependent Bernstein Polynomials. The package also includes models considering Penalized B-Splines. Includes semiparametric models for marginal and conditional density estimation, ROC curve analysis, interval censored data, binary regression models, generalized linear mixed models, IRT type models, and generalized additive models. Also contains functions to compute Pseudo-Bayes factors for model comparison, and to elicitate the precision parameter of the Dirichlet Process. To maximize computational efficiency, the actual sampling for each model is done in compiled FORTRAN. The functions return objects which can be subsequently analyzed with functions provided in the 'coda' package.
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2025-04-22 |
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r-logicreg
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Routines for fitting Logic Regression models. Logic Regression is described in Ruczinski, Kooperberg, and LeBlanc (2003) <DOI:10.1198/1061860032238>. Monte Carlo Logic Regression is described in and Kooperberg and Ruczinski (2005) <DOI:10.1002/gepi.20042>.
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2025-04-22 |
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r-diffusr
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Implementation of network diffusion algorithms such as heat diffusion or Markov random walks. Network diffusion algorithms generally spread information in the form of node weights along the edges of a graph to other nodes. These weights can for example be interpreted as temperature, an initial amount of water, the activation of neurons in the brain, or the location of a random surfer in the internet. The information (node weights) is iteratively propagated to other nodes until a equilibrium state or stop criterion occurs.
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2025-04-22 |
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r-clustercrit
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Compute clustering validation indices.
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2025-04-22 |
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r-corrgram
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Calculates correlation of variables and displays the results graphically. Included panel functions can display points, shading, ellipses, and correlation values with confidence intervals. See Friendly (2002) <doi:10.1198/000313002533>.
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2025-04-22 |
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r-rafalib
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A series of shortcuts for routine tasks originally developed by Rafael A. Irizarry to facilitate data exploration.
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2025-04-22 |
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r-shinyalert
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public |
Easily create pretty popup messages (modals) in 'Shiny'. A modal can contain text, images, OK/Cancel buttons, an input to get a response from the user, and many more customizable options.
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2025-04-22 |
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r-invariantcausalprediction
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Confidence intervals for causal effects, using data collected in different experimental or environmental conditions. Hidden variables can be included in the model with a more experimental version.
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2025-04-22 |
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r-rclipboard
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Leverages the functionality of 'clipboard.js', a JavaScript library for HMTL5-based copy to clipboard from web pages (see <https://clipboardjs.com> for more information), and provides a reactive copy-to-clipboard UI button component, called 'rclipButton', for 'shiny' R applications.
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2025-04-22 |
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r-mcbiopi
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Computes the prime implicants or a minimal disjunctive normal form for a logic expression presented by a truth table or a logic tree. Has been particularly developed for logic expressions resulting from a logic regression analysis, i.e. logic expressions typically consisting of up to 16 literals, where the prime implicants are typically composed of a maximum of 4 or 5 literals.
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2025-04-22 |
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r-gptk
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The gptk package implements a general-purpose toolkit for Gaussian process regression with a variety of covariance functions (e.g. RBF, Mattern, polynomial, etc). Based on a MATLAB implementation by Neil D. Lawrence. See inst/doc/index.html for more details.
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2025-04-22 |
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r-waffle
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Square pie charts (a.k.a. waffle charts) can be used to communicate parts of a whole for categorical quantities. To emulate the percentage view of a pie chart, a 10x10 grid should be used with each square representing 1% of the total. Modern uses of waffle charts do not necessarily adhere to this rule and can be created with a grid of any rectangular shape. Best practices suggest keeping the number of categories small, just as should be done when creating pie charts. Tools are provided to create waffle charts as well as stitch them together, and to use glyphs for making isotype pictograms.
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2025-04-22 |
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r-sparsemvn
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Computes multivariate normal (MVN) densities, and samples from MVN distributions, when the covariance or precision matrix is sparse.
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2025-04-22 |
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r-aplpack
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public |
Some functions for drawing some special plots: The function 'bagplot' plots a bagplot, 'faces' plots chernoff faces, 'iconplot' plots a representation of a frequency table or a data matrix, 'plothulls' plots hulls of a bivariate data set, 'plotsummary' plots a graphical summary of a data set, 'puticon' adds icons to a plot, 'skyline.hist' combines several histograms of a one dimensional data set in one plot, 'slider' functions supports some interactive graphics, 'spin3R' helps an inspection of a 3-dim point cloud, 'stem.leaf' plots a stem and leaf plot, 'stem.leaf.backback' plots back-to-back versions of stem and leaf plot.
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2025-04-22 |
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r-googleauthr
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Create R functions that interact with OAuth2 Google APIs <https://developers.google.com/apis-explorer/> easily, with auto-refresh and Shiny compatibility.
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2025-04-22 |
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r-truncdist
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A collection of tools to evaluate probability density functions, cumulative distribution functions, quantile functions and random numbers for truncated random variables. These functions are provided to also compute the expected value and variance. Nadarajah and Kotz (2006) developed most of the functions. QQ plots can be produced. All the probability functions in the stats, stats4 and evd packages are automatically available for truncation..
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2025-04-22 |
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r-nbclust
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It provides 30 indexes for determining the optimal number of clusters in a data set and offers the best clustering scheme from different results to the user.
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2025-04-22 |
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r-s4vd
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The main function s4vd() performs a biclustering via sparse singular value decomposition with a nested stability selection. The results is an biclust object and thus all methods of the biclust package can be applied.
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2025-04-22 |
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r-origami
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A general framework for the application of cross-validation schemes to particular functions. By allowing arbitrary lists of results, origami accommodates a range of cross-validation applications.
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2025-04-22 |
