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open-clip-torch
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public |
OpenCLIP
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2025-09-21 |
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r-cgdsr
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public |
Provides a basic set of R functions for querying the Cancer Genomics Data Server (CGDS), hosted by the Computational Biology Center at Memorial-Sloan-Kettering Cancer Center (MSKCC) at <www.cbioportal.org>.
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2025-09-21 |
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r-zoib
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public |
Fits beta regression and zero-or-one inflated beta regression and obtains Bayesian Inference of the model via the Markov Chain Monte Carlo approach implemented in JAGS.
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2025-09-21 |
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r-thankr
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public |
Find out who maintains the packages you use in your current session or in your package library and maybe say 'thank you'.
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2025-09-21 |
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r-osd
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public |
Compound deconvolution for chromatographic data, including gas chromatography - mass spectrometry (GC-MS) and comprehensive gas chromatography - mass spectrometry (GCxGC-MS). The package includes functions to perform independent component analysis - orthogonal signal deconvolution (ICA-OSD), independent component regression (ICR), multivariate curve resolution (MCR-ALS) and orthogonal signal deconvolution (OSD) alone.
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2025-09-21 |
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r-base64
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public |
Compatibility wrapper to replace the orphaned package by Romain Francois. New applications should use the 'openssl' or 'base64enc' package instead.
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2025-09-21 |
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r-rrum
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public |
Implementation of Gibbs sampling algorithm for Bayesian Estimation of the Reduced Reparameterized Unified Model ('rrum'), described by Culpepper and Hudson (2017) <doi: 10.1177/0146621617707511>.
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2025-09-21 |
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joserfc
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public |
The ultimate Python library for JOSE RFCs, including JWS, JWE, JWK, JWA, JWT
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2025-09-21 |
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mkdocstrings
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public |
Automatic documentation from sources, for MkDocs.
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2025-09-21 |
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r-isotree
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public |
Fast and multi-threaded implementation of isolation forest (Liu, Ting, Zhou (2008) <doi:10.1109/ICDM.2008.17>), extended isolation forest (Hariri, Kind, Brunner (2018) <arXiv:1811.02141>), SCiForest (Liu, Ting, Zhou (2010) <doi:10.1007/978-3-642-15883-4_18>), fair-cut forest (Cortes (2021) <arXiv:2110:13402>), robust random-cut forest (Guha, Mishra, Roy, Schrijvers (2016) <http://proceedings.mlr.press/v48/guha16.html>), and customizable variations of them, for isolation-based outlier detection, clustered outlier detection, distance or similarity approximation (Cortes (2019) <arXiv:1910.12362>), isolation kernel calculation (Ting, Zhu, Zhou (2018) <doi:10.1145/3219819.3219990>), and imputation of missing values (Cortes (2019) <arXiv:1911.06646>), based on random or guided decision tree splitting, and providing different metrics for scoring anomalies based on isolation depth or density (Cortes (2021) <arXiv:2111.11639>). Provides simple heuristics for fitting the model to categorical columns and handling missing data, and offers options for varying between random and guided splits, and for using different splitting criteria.
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2025-09-21 |
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r-spocc
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public |
A programmatic interface to many species occurrence data sources, including Global Biodiversity Information Facility ('GBIF'), 'USGSs' Biodiversity Information Serving Our Nation ('BISON'), 'iNaturalist', Berkeley 'Ecoinformatics' Engine, 'eBird', Integrated Digitized 'Biocollections' ('iDigBio'), 'VertNet', Ocean 'Biogeographic' Information System ('OBIS'), and Atlas of Living Australia ('ALA'). Includes functionality for retrieving species occurrence data, and combining those data.
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2025-09-21 |
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r-lavaan
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public |
Fit a variety of latent variable models, including confirmatory factor analysis, structural equation modeling and latent growth curve models.
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2025-09-21 |
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r-multipanelfigure
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public |
Tools to create a layout for figures made of multiple panels, and to fill the panels with base, 'lattice', 'ggplot2' and 'ComplexHeatmap' plots, grobs, as well as content from all image formats supported by 'ImageMagick' (accessed through 'magick').
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2025-09-21 |
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r-rrblup
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public |
Software for genomic prediction with the RR-BLUP mixed model (Endelman 2011, <doi:10.3835/plantgenome2011.08.0024>). One application is to estimate marker effects by ridge regression; alternatively, BLUPs can be calculated based on an additive relationship matrix or a Gaussian kernel.
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2025-09-21 |
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r-tgp
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public |
Bayesian nonstationary, semiparametric nonlinear regression and design by treed Gaussian processes (GPs) with jumps to the limiting linear model (LLM). Special cases also implemented include Bayesian linear models, CART, treed linear models, stationary separable and isotropic GPs, and GP single-index models. Provides 1-d and 2-d plotting functions (with projection and slice capabilities) and tree drawing, designed for visualization of tgp-class output. Sensitivity analysis and multi-resolution models are supported. Sequential experimental design and adaptive sampling functions are also provided, including ALM, ALC, and expected improvement. The latter supports derivative-free optimization of noisy black-box functions. For details and tutorials, see Gramacy (2007) <doi:10.18637/jss.v019.i09> and Gramacy & Taddy (2010) <doi:10.18637/jss.v033.i06>.
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2025-09-21 |
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r-cvms
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public |
Cross-validate one or multiple regression and classification models and get relevant evaluation metrics in a tidy format. Validate the best model on a test set and compare it to a baseline evaluation. Alternatively, evaluate predictions from an external model. Currently supports regression and classification (binary and multiclass). Described in chp. 5 of Jeyaraman, B. P., Olsen, L. R., & Wambugu M. (2019, ISBN: 9781838550134).
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2025-09-21 |
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r-latexpdf
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public |
Converts table-like objects to stand-alone PDF or PNG. Can be used to embed tables and arbitrary content in PDF or Word documents. Provides a low-level R interface for creating 'LaTeX' code, e.g. command() and a high-level interface for creating PDF documents, e.g. as.pdf.data.frame(). Extensive customization is available via mid-level functions, e.g. as.tabular(). See also 'package?latexpdf'. Support for PNG is experimental; see 'as.png.data.frame'. Adapted from 'metrumrg' <https://r-forge.r-project.org/R/?group_id=1215>. Requires a compatible installation of 'pdflatex', e.g. <https://miktex.org/>.
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2025-09-21 |
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r-iptools
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public |
A toolkit for manipulating, validating and testing 'IP' addresses and ranges, along with datasets relating to 'IP' addresses. Tools are also provided to map 'IPv4' blocks to country codes. While it primarily has support for the 'IPv4' address space, more extensive 'IPv6' support is intended.
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2025-09-21 |
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simdjson-static
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public |
Parsing gigabytes of JSON per second
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2025-09-21 |
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simdjson
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public |
Parsing gigabytes of JSON per second
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2025-09-21 |
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r-cloudos
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public |
The 'CloudOS' client library for R makes it easy to interact with CloudOS <https://cloudos.lifebit.ai/> in the R environment for analysis.
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2025-09-21 |
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r-matrixeqtl
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public |
Matrix eQTL is designed for fast eQTL analysis on large datasets. Matrix eQTL can test for association between genotype and gene expression using linear regression with either additive or ANOVA genotype effects. The models can include covariates to account for factors as population stratification, gender, and clinical variables. It also supports models with heteroscedastic and/or correlated errors, false discovery rate estimation and separate treatment of local (cis) and distant (trans) eQTLs. For more details see Shabalin (2012) <doi:10.1093/bioinformatics/bts163>.
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2025-09-21 |
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r-rserve
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public |
Rserve acts as a socket server (TCP/IP or local sockets) which allows binary requests to be sent to R. Every connection has a separate workspace and working directory. Client-side implementations are available for popular languages such as C/C++ and Java, allowing any application to use facilities of R without the need of linking to R code. Rserve supports remote connection, user authentication and file transfer. A simple R client is included in this package as well.
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2025-09-21 |
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flake8-sfs
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public |
Extension for flake8 for validating Python String Formatting Style (SFS)
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2025-09-21 |
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r-roi.plugin.glpk
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public |
Enhances the 'R' Optimization Infrastructure ('ROI') package by registering the free 'GLPK' solver. It allows for solving mixed integer linear programming ('MILP') problems as well as all variants/combinations of 'LP', 'IP'.
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2025-09-21 |
