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odetoolbox
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public |
ODE-toolbox: Automatic selection and generation of integration schemes
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2025-09-22 |
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r-emld
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public |
This is a utility for transforming Ecological Metadata Language ('EML') files into 'JSON-LD' and back into 'EML.' Doing so creates a list-based representation of 'EML' in R, so that 'EML' data can easily be manipulated using standard 'R' tools. This makes this package an effective backend for other 'R'-based tools working with 'EML.' By abstracting away the complexity of 'XML' Schema, developers can build around native 'R' list objects and not have to worry about satisfying many of the additional constraints of set by the schema (such as element ordering, which is handled automatically). Additionally, the 'JSON-LD' representation enables the use of developer-friendly 'JSON' parsing and serialization that may facilitate the use of 'EML' in contexts outside of 'R,' as well as the informatics-friendly serializations such as 'RDF' and 'SPARQL' queries.
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2025-09-22 |
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r-rmzqc
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public |
Reads, writes and validates 'mzQC' files. The 'mzQC' format is a standardized file format for the exchange, transmission, and archiving of quality metrics derived from biological mass spectrometry data, as defined by the HUPO-PSI (Human Proteome Organisation - Proteomics Standards Initiative) Quality Control working group. See <https://hupo-psi.github.io/mzQC/> for details.
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2025-09-22 |
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r-poiclaclu
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public |
Implements the methods described in the paper, Witten (2011) Classification and Clustering of Sequencing Data using a Poisson Model, Annals of Applied Statistics 5(4) 2493-2518.
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2025-09-22 |
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r-btyd
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public |
Functions for data preparation, parameter estimation, scoring, and plotting for the BG/BB (Fader, Hardie, and Shang 2010 <doi:10.1287/mksc.1100.0580>), BG/NBD (Fader, Hardie, and Lee 2005 <doi:10.1287/mksc.1040.0098>) and Pareto/NBD and Gamma/Gamma (Fader, Hardie, and Lee 2005 <doi:10.1509/jmkr.2005.42.4.415>) models.
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2025-09-22 |
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r-ptw
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public |
Parametric Time Warping aligns patterns, i.e. it aims to put corresponding features at the same locations. The algorithm searches for an optimal polynomial describing the warping. It is possible to align one sample to a reference, several samples to the same reference, or several samples to several references. One can choose between calculating individual warpings, or one global warping for a set of samples and one reference. Two optimization criteria are implemented: RMS (Root Mean Square error) and WCC (Weighted Cross Correlation). Both warping of peak profiles and of peak lists are supported.
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2025-09-22 |
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hdx-python-country
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public |
Utilities to map between country and region codes and names, and to match
administrative level names from different sources
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2025-09-22 |
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deepspeed
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public |
DeepSpeed library
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2025-09-22 |
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r-nodbi
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public |
Simplified document database access and manipulation, providing a common API across supported 'NoSQL' databases 'Elasticsearch', 'CouchDB', 'MongoDB' as well as 'SQLite/JSON1', 'PostgreSQL', and 'DuckDB'.
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2025-09-22 |
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r-shinyalert
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public |
Easily create pretty popup messages (modals) in 'Shiny'. A modal can contain text, images, OK/Cancel buttons, an input to get a response from the user, and many more customizable options.
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2025-09-22 |
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astropy-iers-data
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public |
IERS Earth Rotation and Leap Second tables for the astropy core package
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2025-09-22 |
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r-diagrammersvg
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public |
Allows for export of DiagrammeR Graphviz objects to SVG.
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2025-09-22 |
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r-dagitty
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public |
A port of the web-based software 'DAGitty', available at <http://dagitty.net>, for analyzing structural causal models (also known as directed acyclic graphs or DAGs). This package computes covariate adjustment sets for estimating causal effects, enumerates instrumental variables, derives testable implications (d-separation and vanishing tetrads), generates equivalent models, and includes a simple facility for data simulation.
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2025-09-22 |
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r-jsonld
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public |
JSON-LD is a light-weight syntax for expressing linked data. It is primarily intended for web-based programming environments, interoperable web services and for storing linked data in JSON-based databases. This package provides bindings to the JavaScript library for converting, expanding and compacting JSON-LD documents.
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2025-09-22 |
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r-svars
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public |
Implements data-driven identification methods for structural vector autoregressive (SVAR) models as described in Lange et al. (2021) <doi:10.18637/jss.v097.i05>. Based on an existing VAR model object (provided by e.g. VAR() from the 'vars' package), the structural impact matrix is obtained via data-driven identification techniques (i.e. changes in volatility (Rigobon, R. (2003) <doi:10.1162/003465303772815727>), patterns of GARCH (Normadin, M., Phaneuf, L. (2004) <doi:10.1016/j.jmoneco.2003.11.002>), independent component analysis (Matteson, D. S, Tsay, R. S., (2013) <doi:10.1080/01621459.2016.1150851>), least dependent innovations (Herwartz, H., Ploedt, M., (2016) <doi:10.1016/j.jimonfin.2015.11.001>), smooth transition in variances (Luetkepohl, H., Netsunajev, A. (2017) <doi:10.1016/j.jedc.2017.09.001>) or non-Gaussian maximum likelihood (Lanne, M., Meitz, M., Saikkonen, P. (2017) <doi:10.1016/j.jeconom.2016.06.002>)).
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2025-09-22 |
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r-randomcolor
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public |
Simple methods to generate attractive random colors. The random colors are from a wrapper of 'randomColor.js' <https://github.com/davidmerfield/randomColor>. In addition, it also generates optimally distinct colors based on k-means (inspired by 'IWantHue' <https://github.com/medialab/iwanthue>).
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2025-09-22 |
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r-jsonvalidate
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public |
Uses the node library 'is-my-json-valid' or 'ajv' to validate 'JSON' against a 'JSON' schema. Drafts 04, 06 and 07 of 'JSON' schema are supported.
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2025-09-22 |
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r-juicyjuice
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public |
There are occasions where you need a piece of HTML with integrated styles. A prime example of this is HTML email. This transformation involves moving the CSS and associated formatting instructions from the style block in the head of your document into the body of the HTML. Many prominent email clients require integrated styles in HTML email; otherwise a received HTML email will be displayed without any styling. This package will quickly and precisely perform these CSS transformations when given HTML text and it does so by using the JavaScript 'juice' library.
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2025-09-22 |
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fileseq
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public |
A Python library for parsing frame ranges and file sequences commonly used in VFX and Animation applications.
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2025-09-22 |
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kubernetes-kind
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public |
Kubernetes IN Docker - local clusters for testing Kubernetes
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2025-09-22 |
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r-neldermead
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public |
Provides several direct search optimization algorithms based on the simplex method. The provided algorithms are direct search algorithms, i.e. algorithms which do not use the derivative of the cost function. They are based on the update of a simplex. The following algorithms are available: the fixed shape simplex method of Spendley, Hext and Himsworth (unconstrained optimization with a fixed shape simplex), the variable shape simplex method of Nelder and Mead (unconstrained optimization with a variable shape simplex made), and Box's complex method (constrained optimization with a variable shape simplex).
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2025-09-22 |
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r-pathdiagram
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public |
Implementation of simple functions to draw basic path diagrams just for visualization purposes.
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2025-09-22 |
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r-admm
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public |
Provides algorithms to solve popular optimization problems in statistics such as regression or denoising based on Alternating Direction Method of Multipliers (ADMM). See Boyd et al (2010) <doi:10.1561/2200000016> for complete introduction to the method.
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2025-09-22 |
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r-rworldxtra
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public |
High resolution vector country boundaries derived from Natural Earth data, can be plotted in rworldmap.
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2025-09-22 |
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r-ggbump
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public |
A geom for ggplot to create bump plots. Can be good to use for showing rank over time.
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2025-09-22 |
