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r-genio
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public |
Implements readers and writers for file formats associated with genetics data. Reading and writing Plink BED/BIM/FAM and GCTA binary GRM formats is fully supported, including a lightning-fast BED reader and writer implementations. Other functions are 'readr' wrappers that are more constrained, user-friendly, and efficient for these particular applications; handles Plink and Eigenstrat tables (FAM, BIM, IND, and SNP files). There are also make functions for FAM and BIM tables with default values to go with simulated genotype data.
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2025-09-23 |
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r-chronicler
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public |
Decorate functions to make them return enhanced output. The enhanced output consists in an object of type 'chronicle' containing the result of the function applied to its arguments, as well as a log detailing when the function was run, what were its inputs, what were the errors (if the function failed to run) and other useful information. Tools to handle decorated functions are included, such as a forward pipe operator that makes chaining decorated functions possible.
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2025-09-23 |
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r-radarchart
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public |
Create interactive radar charts using the 'Chart.js' 'JavaScript' library and the 'htmlwidgets' package. 'Chart.js' <http://www.chartjs.org/> is a lightweight library that supports several types of simple chart using the 'HTML5' canvas element. This package provides an R interface specifically to the radar chart, sometimes called a spider chart, for visualising multivariate data.
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2025-09-23 |
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r-rerddap
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public |
General purpose R client for 'ERDDAP' servers. Includes functions to search for 'datasets', get summary information on 'datasets', and fetch 'datasets', in either 'csv' or 'netCDF' format. 'ERDDAP' information: <https://upwell.pfeg.noaa.gov/erddap/information.html>.
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2025-09-23 |
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r-easypubmed
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public |
Query NCBI Entrez and retrieve PubMed records in XML or text format. Process PubMed records by extracting and aggregating data from selected fields. A large number of records can be easily downloaded via this simple-to-use interface to the NCBI PubMed API.
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2025-09-23 |
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r-mcbiopi
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public |
Computes the prime implicants or a minimal disjunctive normal form for a logic expression presented by a truth table or a logic tree. Has been particularly developed for logic expressions resulting from a logic regression analysis, i.e. logic expressions typically consisting of up to 16 literals, where the prime implicants are typically composed of a maximum of 4 or 5 literals.
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2025-09-23 |
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r-caper
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public |
Functions for performing phylogenetic comparative analyses.
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2025-09-23 |
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r-curry
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public |
Partial application is the process of reducing the arity of a function by fixing one or more arguments, thus creating a new function lacking the fixed arguments. The curry package provides three different ways of performing partial function application by fixing arguments from either end of the argument list (currying and tail currying) or by fixing multiple named arguments (partial application). This package provides this functionality through the %<%, %-<%, and %><% operators which allows for a programming style comparable to modern functional languages. Compared to other implementations such a purrr::partial() the operators in curry composes functions with named arguments, aiding in autocomplete etc.
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2025-09-23 |
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r-drawr
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public |
We present DRaWR, a network-based method for ranking genes or properties related to a given gene set. Such related genes or properties are identified from among the nodes of a large, heterogeneous network of biological information. Our method involves a random walk with restarts, performed on an initial network with multiple node and edge types, preserving more of the original, specific property information than current methods that operate on homogeneous networks. In this first stage of our algorithm, we find the properties that are the most relevant to the given gene set and extract a subnetwork of the original network, comprising only the relevant properties. We then rerank genes by their similarity to the given gene set, based on a second random walk with restarts, performed on the above subnetwork.
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2025-09-23 |
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r-cmdfun
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public |
Writing interfaces to command line software is cumbersome. 'cmdfun' provides a framework for building function calls to seamlessly interface with shell commands by allowing lazy evaluation of command line arguments. 'cmdfun' also provides methods for handling user-specific paths to tool installs or secrets like API keys. Its focus is to equally serve package builders who wish to wrap command line software, and to help analysts stay inside R when they might usually leave to execute non-R software.
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2025-09-23 |
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r-smdocker
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public |
Allows users to easily build custom 'docker images' <https://docs.docker.com/> from 'Amazon Web Service Sagemaker' <https://aws.amazon.com/sagemaker/> using 'Amazon Web Service CodeBuild' <https://aws.amazon.com/codebuild/>.
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2025-09-23 |
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r-rsq
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public |
Calculate generalized R-squared, partial R-squared, and partial correlation coefficients for generalized linear models (including quasi models with well defined variance functions).
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2025-09-23 |
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r-ggmice
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public |
Enhance a 'mice' imputation workflow with visualizations for incomplete and/or imputed data. The plotting functions produce 'ggplot' objects which may be easily manipulated or extended. Use 'ggmice' to inspect missing data, develop imputation models, evaluate algorithmic convergence, or compare observed versus imputed data.
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2025-09-23 |
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endf
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public |
Python interface to ENDF-6 files
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2025-09-23 |
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r-entropyexplorer
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public |
Rows of two matrices are compared for Shannon entropy, coefficient of variation, and expression. P-values can be requested for all metrics.
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2025-09-23 |
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chempy
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public |
A package useful for chemistry written in Python.
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2025-09-23 |
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azure-mgmt-storage
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public |
Microsoft Azure Storage Resource Management Client Library for Python
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2025-09-23 |
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openssl
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public |
OpenSSL is an open-source implementation of the SSL and TLS protocols
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2025-09-23 |
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libopenssl-static
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public |
OpenSSL is an open-source implementation of the SSL and TLS protocols
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2025-09-23 |
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realtime
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public |
A Python Client for Phoenix Channels
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2025-09-23 |
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dashscope
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public |
Python SDK for dashscope [model studio](https://www.alibabacloud.com/en/product/modelstudio?_p_lc=1)
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2025-09-23 |
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r-aricode
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public |
Implements an efficient O(n) algorithm based on bucket-sorting for fast computation of standard clustering comparison measures. Available measures include adjusted Rand index (ARI), normalized information distance (NID), normalized mutual information (NMI), adjusted mutual information (AMI), normalized variation information (NVI) and entropy, as described in Vinh et al (2009) <doi:10.1145/1553374.1553511>. Include AMI (Adjusted Mutual Information) since version 0.1.2, a modified version of ARI (MARI) and simple Chi-square distance since version 1.0.0.
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2025-09-23 |
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r-flexsurv
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public |
Flexible parametric models for time-to-event data, including the Royston-Parmar spline model, generalized gamma and generalized F distributions. Any user-defined parametric distribution can be fitted, given at least an R function defining the probability density or hazard. There are also tools for fitting and predicting from fully parametric multi-state models.
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2025-09-23 |
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r-dockerfiler
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public |
Build a Dockerfile straight from your R session. 'dockerfiler' allows you to create step by step a Dockerfile, and provide convenient tools to wrap R code inside this Dockerfile.
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2025-09-23 |
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r-sroc
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public |
This package contains a collection of functions to perform nonparametric estimation of receiver operating characteristic (ROC) curves for continuous data.
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2025-09-23 |
