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pot
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Python Optimal Transport library
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2025-09-23 |
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pogo
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GUI application for generating Tango projects
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2025-09-23 |
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madoka
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Memory-efficient CountMin Sketch key-value structure (based on Madoka C++ library)
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2025-09-23 |
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r-gifski
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Multi-threaded GIF encoder written in Rust: <https://gif.ski/>. Converts images to GIF animations using pngquant's efficient cross-frame palettes and temporal dithering with thousands of colors per frame.
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2025-09-23 |
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r-miscf
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Various functions for random number generation, density estimation, classification, curve fitting, and spatial data analysis.
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2025-09-23 |
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r-geoarrow
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Provides extension types and conversions to between R-native object types and 'Arrow' columnar types. This includes integration among the 'arrow', 'nanoarrow', 'sf', and 'wk' packages such that spatial metadata is preserved wherever possible. Extension type implementations ensure first-class geometry data type support in the 'arrow' and 'nanoarrow' packages.
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2025-09-23 |
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r-msgps
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This package computes the degrees of freedom of the lasso, elastic net, generalized elastic net and adaptive lasso based on the generalized path seeking algorithm. The optimal model can be selected by model selection criteria including Mallows' Cp, bias-corrected AIC (AICc), generalized cross validation (GCV) and BIC.
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2025-09-23 |
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r-stpphawkes
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Estimation of model parameters for marked Hawkes process. Accounts for missing data in the estimation of the parameters. Technical details found in (Tucker et al., 2019 <DOI:10.1016/j.spasta.2018.12.004>).
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2025-09-23 |
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r-treebase
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Interface to the API for 'TreeBASE' <http://treebase.org> from 'R.' 'TreeBASE' is a repository of user-submitted phylogenetic trees (of species, population, or genes) and the data used to create them.
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2025-09-23 |
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r-emcluster
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EM algorithms and several efficient initialization methods for model-based clustering of finite mixture Gaussian distribution with unstructured dispersion in both of unsupervised and semi-supervised learning.
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2025-09-23 |
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r-ontologysimilarity
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Functions for calculating semantic similarities between ontological terms or sets of ontological terms based on term information content and assessing statistical significance of similarity in the context of a collection of sets of ontological terms.
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2025-09-23 |
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r-shinypanel
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Add shiny inputs with one or more inline buttons that grow and shrink with inputs. Also add tool tips to input buttons and styling and messages for input validation.
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2025-09-23 |
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r-ggmuller
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Create plots that combine a phylogeny and frequency dynamics. Phylogenetic input can be a generic adjacency matrix or a tree of class "phylo". Inspired by similar plots in publications of the labs of RE Lenski and JE Barrick. Named for HJ Muller (who popularised such plots) and H Wickham (whose code this package exploits).
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2025-09-23 |
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r-wrassp
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A wrapper around Michel Scheffers's 'libassp' (<http://libassp.sourceforge.net/>). The 'libassp' (Advanced Speech Signal Processor) library aims at providing functionality for handling speech signal files in most common audio formats and for performing analyses common in phonetic science/speech science. This includes the calculation of formants, fundamental frequency, root mean square, auto correlation, a variety of spectral analyses, zero crossing rate, filtering etc. This wrapper provides R with a large subset of 'libassp's signal processing functions and provides them to the user in a (hopefully) user-friendly manner.
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2025-09-23 |
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r-namedropr
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Provides 'visual citations' containing the metadata of a scientific paper and a 'QR' code. A 'visual citation' is a banner containing title, authors, journal and year of a publication. This package can create such banners based on 'BibTeX' and 'BibLaTeX' references and includes a QR code pointing to the 'DOI'. The resulting HTML object or PNG image can be included in a presentation to point the audience to good resources for further reading. Styling is possible via predefined designs or via custom 'CSS'. This package is not intended as replacement for proper reference manager packages, but a tool to enrich scientific presentation slides.
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2025-09-23 |
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r-grobblr
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A tool which allows users the ability to intuitively create flexible, reproducible portable document format reports comprised of aesthetically pleasing tables, images, plots and/or text.
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2025-09-23 |
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r-xlconnectjars
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Provides external JAR dependencies for the XLConnect package.
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2025-09-23 |
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r-fftwtools
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Provides a wrapper for several 'FFTW' functions. This package provides access to the two-dimensional 'FFT', the multivariate 'FFT', and the one-dimensional real to complex 'FFT' using the 'FFTW3' library. The package includes the functions fftw() and mvfftw() which are designed to mimic the functionality of the R functions fft() and mvfft(). The 'FFT' functions have a parameter that allows them to not return the redundant complex conjugate when the input is real data.
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2025-09-23 |
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r-radiant.data
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The Radiant Data menu includes interfaces for loading, saving, viewing, visualizing, summarizing, transforming, and combining data. It also contains functionality to generate reproducible reports of the analyses conducted in the application.
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2025-09-23 |
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r-schtools
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A collection of useful functions and example code created and used by the Schloss Lab for reproducible microbiome research. Perform common tasks like read files created by mothur <https://mothur.org/>, tidy up your microbiome data, and format R Markdown documents for publication. See the website <http://www.schlosslab.org/schtools/> for more information, documentation, and examples.
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2025-09-23 |
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r-tidygeocoder
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An intuitive interface for getting data from geocoder services.
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2025-09-23 |
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r-parmigene
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Parallel estimation of the mutual information based on entropy estimates from k-nearest neighbors distances and algorithms for the reconstruction of gene regulatory networks (Sales et al, 2011 <doi:10.1093/bioinformatics/btr274>).
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2025-09-23 |
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r-datapasta
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RStudio addins and R functions that make copy-pasting vectors and tables to text painless.
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2025-09-23 |
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r-ddalpha
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Contains procedures for depth-based supervised learning, which are entirely non-parametric, in particular the DDalpha-procedure (Lange, Mosler and Mozharovskyi, 2014 <doi:10.1007/s00362-012-0488-4>). The training data sample is transformed by a statistical depth function to a compact low-dimensional space, where the final classification is done. It also offers an extension to functional data and routines for calculating certain notions of statistical depth functions. 50 multivariate and 5 functional classification problems are included.
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2025-09-23 |
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sqlmesh
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Efficient data transformation and modeling framework that is backwards compatible with dbt.
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2025-09-23 |
