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r-uchardet
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R bindings of the 'uchardet', encoding detector library from Mozilla (<https://www.freedesktop.org/wiki/Software/uchardet/>). It takes a sequence of bytes in an unknown character encoding and without any additional information, and attempts to get the encoding of the text. All return names of the encodings are iconv-compatible.
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2025-09-23 |
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r-excelr
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An R interface to 'jExcel' library to create web-based interactive tables and spreadsheets compatible with 'Excel' or any other spreadsheet software.
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2025-09-23 |
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r-tidync
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Tidy tools for 'NetCDF' data sources. Explore the contents of a 'NetCDF' source (file or URL) presented as variables organized by grid with a database-like interface. The hyper_filter() interactive function translates the filter value or index expressions to array-slicing form. No data is read until explicitly requested, as a data frame or list of arrays via hyper_tibble() or hyper_array().
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2025-09-23 |
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r-rang
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Resolve the dependency graph of R packages at a specific time point based on the information from various 'R-hub' web services <https://blog.r-hub.io/>. The dependency graph can then be used to reconstruct the R computational environment with 'Rocker' <https://rocker-project.org>.
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2025-09-23 |
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r-radix
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Scientific and technical article format for the web. 'Radix' articles feature attractive, reader-friendly typography, flexible layout options for visualizations, and full support for footnotes and citations.
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2025-09-23 |
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r-systemfit
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Econometric estimation of simultaneous systems of linear and nonlinear equations using Ordinary Least Squares (OLS), Weighted Least Squares (WLS), Seemingly Unrelated Regressions (SUR), Two-Stage Least Squares (2SLS), Weighted Two-Stage Least Squares (W2SLS), and Three-Stage Least Squares (3SLS) as suggested, e.g., by Zellner (1962) <doi:10.2307/2281644>, Zellner and Theil (1962) <doi:10.2307/1911287>, and Schmidt (1990) <doi:10.1016/0304-4076(90)90127-F>.
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2025-09-23 |
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r-coenocliner
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Simulate species occurrence and abundances (counts) along gradients.
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2025-09-23 |
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r-irr
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Coefficients of Interrater Reliability and Agreement for quantitative, ordinal and nominal data: ICC, Finn-Coefficient, Robinson'A, Kendall's W, Cohen's Kappa, ...
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2025-09-23 |
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r-colordf
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Colorful Data Frames in the terminal. The new class does change the behaviour of any of the objects, but adds a style definition and a print method. Using ANSI escape codes, it colors the terminal output of data frames. Some column types (such as p-values and identifiers) are automatically recognized.
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2025-09-23 |
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pnpm
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📦🚀 Fast, disk space efficient package manager
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2025-09-23 |
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openpnm
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A Python package for performing pore network modeling of porous media
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2025-09-23 |
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supabase
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Python Client for Supabase
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2025-09-23 |
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fractal-server
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Backend component of the Fractal analytics platform
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2025-09-23 |
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r-lmperm
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Linear model functions using permutation tests.
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2025-09-23 |
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r-pcit
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Apply Partial Correlation coefficient with Information Theory (PCIT) to a correlation matrix. The PCIT algorithm identifies meaningful correlations to define edges in a weighted network. The algorithm can be applied to any correlation-based network including but not limited to gene co-expression networks. To reduce compute time by making use of multiple compute cores, simply run PCIT on a computer with has multiple cores and also has the Rmpi package installed. PCIT will then auto-detect the multicore environment and run in parallel mode without the need to rewrite your scripts. This makes scripts, using PCIT, portable across single core (or no Rmpi package installed) computers which will run in serial mode and multicore (with Rmpi package installed) computers which will run in parallel mode.
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2025-09-23 |
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r-qtlrel
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This software provides tools for quantitative trait mapping in populations such as advanced intercross lines where relatedness among individuals should not be ignored. It can estimate background genetic variance components, impute missing genotypes, simulate genotypes, perform a genome scan for putative quantitative trait loci (QTL), and plot mapping results. It also has functions to calculate identity coefficients from pedigrees, especially suitable for pedigrees that consist of a large number of generations, or estimate identity coefficients from genotypic data in certain circumstances.
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2025-09-23 |
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r-h2o
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R interface for 'H2O', the scalable open source machine learning platform that offers parallelized implementations of many supervised and unsupervised machine learning algorithms such as Generalized Linear Models (GLM), Gradient Boosting Machines (including XGBoost), Random Forests, Deep Neural Networks (Deep Learning), Stacked Ensembles, Naive Bayes, Generalized Additive Models (GAM), Cox Proportional Hazards, K-Means, PCA, Word2Vec, as well as a fully automatic machine learning algorithm (H2O AutoML).
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2025-09-23 |
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r-rvenn
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Set operations for many sets. The base functions for set operations in R can be used for only two sets. This package uses 'purr' to find the union, intersection and difference of three or more sets. This package also provides functions for pairwise set operations among several sets. Further, based on 'ggplot2' and 'ggforce', a Venn diagram can be drawn for two or three sets. For bigger data sets, a clustered heatmap showing presence/absence of the elements of the sets can be drawn based on the 'pheatmap' package. Finally, enrichment test can be applied to two sets whether an overlap is statistically significant or not.
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2025-09-23 |
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r-fftw
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Provides a simple and efficient wrapper around the fastest Fourier transform in the west (FFTW) library <http://www.fftw.org/>.
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2025-09-23 |
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r-shinydashboardplus
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Extend 'shinydashboard' with 'AdminLTE2' components. 'AdminLTE2' is a free 'Bootstrap 3' dashboard template available at <https://adminlte.io>. Customize boxes, add timelines and a lot more.
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2025-09-23 |
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r-prim
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Patient Rule Induction Method (PRIM) for bump hunting in high-dimensional data.
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2025-09-23 |
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r-flowr
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This framework allows you to design and implement complex pipelines, and deploy them on your institution's computing cluster. This has been built keeping in mind the needs of bioinformatics workflows. However, it is easily extendable to any field where a series of steps (shell commands) are to be executed in a (work)flow.
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2025-09-23 |
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r-rsm
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Provides functions to generate response-surface designs, fit first- and second-order response-surface models, make surface plots, obtain the path of steepest ascent, and do canonical analysis. A good reference on these methods is Chapter 10 of Wu, C-F J and Hamada, M (2009) "Experiments: Planning, Analysis, and Parameter Design Optimization" ISBN 978-0-471-69946-0.
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2025-09-23 |
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r-glmpca
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Implements a generalized version of principal components analysis (GLM-PCA) for dimension reduction of non-normally distributed data such as counts or binary matrices. Townes FW, Hicks SC, Aryee MJ, Irizarry RA (2019) <doi:10.1101/574574>. Townes FW (2019) <arXiv:1907.02647>.
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2025-09-23 |
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r-rorcid
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Client for the 'Orcid.org' API (<https://orcid.org/>). Functions included for searching for people, searching by 'DOI', and searching by 'Orcid' 'ID'.
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2025-09-23 |
