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r-ggpointless
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public |
Add minimal emphasis to your plots. 'ggpointless' is a small extension of the 'ggplot2' library making it easy to highlight the first, or last observations, sample minimum and maximum. The goal is to provide additional context. Or just some visual sugar.
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2025-09-24 |
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r-castor
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public |
Efficient phylogenetic analyses on massive phylogenies comprising up to millions of tips. Functions include pruning, rerooting, calculation of most-recent common ancestors, calculating distances from the tree root and calculating pairwise distances. Calculation of phylogenetic signal and mean trait depth (trait conservatism), ancestral state reconstruction and hidden character prediction of discrete characters, simulating and fitting models of trait evolution, fitting and simulating diversification models, dating trees, comparing trees, and reading/writing trees in Newick format. Citation: Louca, Stilianos and Doebeli, Michael (2017) <doi:10.1093/bioinformatics/btx701>.
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2025-09-24 |
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r-moonbook
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public |
Several analysis-related functions for the book entitled "R statistics and graph for medical articles" (written in Korean), version 1, by Keon-Woong Moon with Korean demographic data with several plot functions.
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2025-09-24 |
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r-kernsmoothirt
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public |
Fits nonparametric item and option characteristic curves using kernel smoothing. It allows for optimal selection of the smoothing bandwidth using cross-validation and a variety of exploratory plotting tools. The kernel smoothing is based on methods described in Silverman, B.W. (1986). Density Estimation for Statistics and Data Analysis. Chapman & Hall, London.
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2025-09-24 |
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r-bs4dash
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public |
Make 'Bootstrap 4' dashboards. Use the full power of 'AdminLTE3', a dashboard template built on top of 'Bootstrap 4' <https://github.com/almasaeed2010/AdminLTE/tree/v3-dev>.
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2025-09-24 |
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r-waterml
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public |
Lets you connect to any of the 'Consortium of Universities for the Advancement of Hydrological Science, Inc.' ('CUAHSI') Water Data Center 'WaterOneFlow' web services and read any 'WaterML' time series data file. To see list of available web services, see <http://hiscentral.cuahsi.org>. All versions of 'WaterML' (1.0, 1.1 and 2.0) and both types of the web service protocol ('SOAP' and 'REST') are supported. The package has six data download functions: GetServices(): show all public web services from the HIS Central Catalog. HISCentral_GetSites() and HISCentral_GetSeriesCatalog(): search for sites or time series from the HIS Central catalog based on geographic bounding box, server, or keyword. GetVariables(): Show a data.frame with all variables on the server. GetSites(): Show a data.frame with all sites on the server. GetSiteInfo(): Show what variables, methods and quality control levels are available at the specific site. GetValues(): Given a site code, variable code, start time and end time, fetch a data.frame of all the observation time series data values. The GetValues() function can also parse 'WaterML' data from a custom URL or from a local file.
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2025-09-24 |
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r-shiny.fluent
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public |
A rich set of UI components for building Shiny applications, including inputs, containers, overlays, menus, and various utilities. All components from Fluent UI (the underlying JavaScript library) are available and have usage examples in R.
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2025-09-24 |
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cysignals
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public |
interrupt and signal handling for Cython
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2025-09-24 |
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r-xicor
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public |
Computes robust association measures that do not presuppose linearity. The xi correlation (xicor) is based on cross correlation between ranked increments. The reference for the methods implemented here is Chatterjee, Sourav (2020) <arXiv:1909.10140> This package includes the Galton peas example.
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2025-09-24 |
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r-taxizedb
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public |
Tools for working with 'taxonomic' databases, including utilities for downloading databases, loading them into various 'SQL' databases, cleaning up files, and providing a 'SQL' connection that can be used to do 'SQL' queries directly or used in 'dplyr'.
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2025-09-24 |
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cutlass
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public |
CUDA Templates for Linear Algebra Subroutines
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2025-09-24 |
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r-sparselda
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public |
Performs sparse linear discriminant analysis for Gaussians and mixture of Gaussian models.
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2025-09-24 |
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r-forecasthybrid
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public |
Convenient functions for ensemble forecasts in R combining approaches from the 'forecast' package. Forecasts generated from auto.arima(), ets(), thetaf(), nnetar(), stlm(), tbats(), and snaive() can be combined with equal weights, weights based on in-sample errors (introduced by Bates & Granger (1969) <doi:10.1057/jors.1969.103>), or cross-validated weights. Cross validation for time series data with user-supplied models and forecasting functions is also supported to evaluate model accuracy.
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2025-09-24 |
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dependabot-cli
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public |
A tool for testing and debugging Dependabot update jobs.
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2025-09-24 |
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r-nmf
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public |
Provides a framework to perform Non-negative Matrix Factorization (NMF). The package implements a set of already published algorithms and seeding methods, and provides a framework to test, develop and plug new/custom algorithms. Most of the built-in algorithms have been optimized in C++, and the main interface function provides an easy way of performing parallel computations on multicore machines.
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2025-09-24 |
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r-lmomco
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public |
Extensive functions for L-moments (LMs) and probability-weighted moments (PWMs), parameter estimation for distributions, LM computation for distributions, and L-moment ratio diagrams. Maximum likelihood and maximum product of spacings estimation are also available. LMs for right-tail and left-tail censoring by known or unknown threshold and by indicator variable are available. Asymmetric (asy) trimmed LMs (TL-moments, TLMs) are supported. LMs of residual (resid) and reversed (rev) resid life are implemented along with 13 quantile function operators for reliability and survival analyses. Exact analytical bootstrap estimates of order statistics, LMs, and variances- covariances of LMs are provided. The Harri-Coble Tau34-squared Normality Test is available. Distribution support with "L" (LMs), "TL" (TLMs) and added (+) support for right-tail censoring (RC) encompasses: Asy Exponential (Exp) Power [L], Asy Triangular [L], Cauchy [TL], Eta-Mu [L], Exp. [L], Gamma [L], Generalized (Gen) Exp Poisson [L], Gen Extreme Value [L], Gen Lambda [L,TL], Gen Logistic [L), Gen Normal [L], Gen Pareto [L+RC, TL], Govindarajulu [L], Gumbel [L], Kappa [L], Kappa-Mu [L], Kumaraswamy [L], Laplace [L], Linear Mean Resid. Quantile Function [L], Normal [L], 3-p log-Normal [L], Pearson Type III [L], Rayleigh [L], Rev-Gumbel [L+RC], Rice/Rician [L], Slash [TL], 3-p Student t [L], Truncated Exponential [L], Wakeby [L], and Weibull [L]. Multivariate sample L-comoments (LCMs) are implemented to measure asymmetric associations.
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2025-09-24 |
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r-dina
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public |
Estimate the Deterministic Input, Noisy "And" Gate (DINA) cognitive diagnostic model parameters using the Gibbs sampler described by Culpepper (2015) <doi:10.3102/1076998615595403>.
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2025-09-24 |
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r-spatialtools
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public |
Tools for spatial data analysis. Emphasis on kriging. Provides functions for prediction and simulation. Intended to be relatively straightforward, fast, and flexible.
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2025-09-24 |
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r-scatterd3
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public |
Creates 'D3' 'JavaScript' scatterplots from 'R' with interactive features : panning, zooming, tooltips, etc.
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2025-09-24 |
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r-dmwr2
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public |
Functions and data accompanying the second edition of the book "Data Mining with R, learning with case studies" by Luis Torgo, published by CRC Press.
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2025-09-24 |
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metview
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public |
ECMWF Metview Copyright 2007-2022 ECMWF.
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2025-09-24 |
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r-cbctools
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public |
Design and evaluate choice-based conjoint survey experiments. Generate a variety of survey designs, including random designs, full factorial designs, orthogonal designs, D-optimal designs, and Bayesian D-efficient designs as well as designs with "no choice" options and "labeled" (also known as "alternative specific") designs. Conveniently inspect the design balance and overlap, and simulate choice data for a survey design either randomly or according to a multinomial or mixed logit utility model defined by user-provided prior parameters. Conduct a power analysis for a given survey design by estimating the same model on different subsets of the data to simulate different sample sizes. Full factorial and orthogonal designs are obtained using the 'DoE.base' package (Grömping, 2018) <doi:10.18637/jss.v085.i05>. D-optimal designs are obtained using the 'AlgDesign' package (Wheeler, 2022) <https://CRAN.R-project.org/package=AlgDesign>. Bayesian D-efficient designs are obtained using the 'idefix' package (Traets et al, 2020) <doi:10.18637/jss.v096.i03>. Choice simulation and model estimation in power analyses are handled using the 'logitr' package (Helveston, 2023) <doi:10.18637/jss.v105.i10>.
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2025-09-24 |
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r-wheatmap
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public |
Builds complex plots, heatmaps in particular, using natural semantics. Bigger plots can be assembled using directives such as 'LeftOf', 'RightOf', 'TopOf', and 'Beneath' and more. Other features include clustering, dendrograms and integration with 'ggplot2' generated grid objects. This package is particularly designed for bioinformaticians to assemble complex plots for publication.
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2025-09-24 |
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r-acs
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public |
Provides a general toolkit for downloading, managing, analyzing, and presenting data from the U.S. Census (<https://www.census.gov/data/developers/data-sets.html>), including SF1 (Decennial short-form), SF3 (Decennial long-form), and the American Community Survey (ACS). Confidence intervals provided with ACS data are converted to standard errors to be bundled with estimates in complex acs objects. Package provides new methods to conduct standard operations on acs objects and present/plot data in statistically appropriate ways.
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2025-09-24 |
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r-teamr
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public |
Package of wrapper functions using R6 class to send requests to Microsoft 'Teams' <https://products.office.com/en-us/microsoft-teams/group-chat-software> through webhooks. When you need to share information or data from R to 'Teams', rather than copying/pasting, you can use this package to send well-formatted output from multiple R objects.
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2025-09-24 |
