|
r-directlabels
|
public |
An extensible framework for automatically placing direct labels onto multicolor 'lattice' or 'ggplot2' plots. Label positions are described using Positioning Methods which can be re-used across several different plots. There are heuristics for examining "trellis" and "ggplot" objects and inferring an appropriate Positioning Method.
|
2025-09-23 |
|
moyopy
|
public |
Python binding of Moyo
|
2025-09-23 |
|
homonim
|
public |
Correct drone, aerial and satellite imagery to surface reflectance.
|
2025-09-23 |
|
r-nacho
|
public |
NanoString nCounter data are gene expression assays where there is no need for the use of enzymes or amplification protocols and work with fluorescent barcodes (Geiss et al. (2018) <doi:10.1038/nbt1385>). Each barcode is assigned a messenger-RNA/micro-RNA (mRNA/miRNA) which after bonding with its target can be counted. As a result each count of a specific barcode represents the presence of its target mRNA/miRNA. 'NACHO' (NAnoString quality Control dasHbOard) is able to analyse the exported NanoString nCounter data and facilitates the user in performing a quality control. 'NACHO' does this by visualising quality control metrics, expression of control genes, principal components and sample specific size factors in an interactive web application.
|
2025-09-23 |
|
r-gutenbergr
|
public |
Download and process public domain works in the Project Gutenberg collection <http://www.gutenberg.org/>. Includes metadata for all Project Gutenberg works, so that they can be searched and retrieved.
|
2025-09-23 |
|
jupyterlab-launchpad
|
public |
A redesigned JupyterLab launcher
|
2025-09-23 |
|
r-basictrendline
|
public |
Plot, draw regression line and confidence interval, and show regression equation, R-square and P-value, as simple as possible, by using different models ("line2P", "line3P", "log2P", "exp2P", "exp3P", "power2P", "power3P") built in the 'trendline()' function.
|
2025-09-23 |
|
r-msbox
|
public |
Common mass spectrometry tools described in John Roboz (2013) <doi:10.1201/b15436>. It allows checking element isotopes, calculating (isotope labelled) exact monoisitopic mass, m/z values and mass accuracy, and inspecting possible contaminant mass peaks, examining possible adducts in electrospray ionization (ESI) and matrix-assisted laser desorption ionization (MALDI) ion sources.
|
2025-09-23 |
|
r-ggcorset
|
public |
Corset plots are a visualization technique used strictly to visualize repeat measures at 2 time points (such as pre- and post- data). The distribution of measurements are visualized at each time point, whilst the trajectories of individual change are visualized by connecting the pre- and post- values linearly. These lines can be coloured to represent the magnitude of change, or other user-defined value. This method of visualization is ideal for showing the heterogeneity of data, including differences by sub-groups. The package relies on 'ggplot2' allowing for easy integration so that users can customize their visualizations as required. Users can create corset plots using data in either wide or long format using the functions gg_corset() or gg_corset_elongated(), respectively.
|
2025-09-23 |
|
jupyterlab-gallery
|
public |
A JupyterLab gallery extension for presenting and downloading examples from remote repositories
|
2025-09-23 |
|
r-pvclust
|
public |
An implementation of multiscale bootstrap resampling for assessing the uncertainty in hierarchical cluster analysis. It provides AU (approximately unbiased) p-value as well as BP (bootstrap probability) value for each cluster in a dendrogram.
|
2025-09-23 |
|
r-matchingr
|
public |
Computes matching algorithms quickly using Rcpp. Implements the Gale-Shapley Algorithm to compute the stable matching for two-sided markets, such as the stable marriage problem and the college-admissions problem. Implements Irving's Algorithm for the stable roommate problem. Implements the top trading cycle algorithm for the indivisible goods trading problem.
|
2025-09-23 |
|
wcwidth
|
public |
Measures number of Terminal column cells of wide-character codes.
|
2025-09-23 |
|
r-rtiff
|
public |
Reads and writes TIFF format images and returns them as a pixmap object. Because the resulting object can be very large for even modestly sized TIFF images, images can be reduced as they are read for improved performance. This package is a wrapper around libtiff (www.libtiff.org), on which it depends (i.e. the libtiff shared library must be on your PATH for the binary to work, and tiffio.h must be on your system to build the package from source). By using libtiff's highlevel TIFFReadRGBAImage function, this package inherently supports a wide range of image formats and compression schemes. This package also provides an implementation of the Ridler Autothresholding algorithm for easy generation of binary masks as described in Ridler & Calvard (1978) <doi:10.1109/TSMC.1978.4310039>.
|
2025-09-23 |
|
openraft
|
public |
RAFT: Response Amplitudes of Floating Turbines
|
2025-09-23 |
|
unocss
|
public |
The CLI for UnoCSS. A perfect fit for traditional backends.
|
2025-09-23 |
|
r-gap
|
public |
It is designed as an integrated package for genetic data analysis of both population and family data. Currently, it contains functions for sample size calculations of both population-based and family-based designs, probability of familial disease aggregation, kinship calculation, statistics in linkage analysis, and association analysis involving genetic markers including haplotype analysis with or without environmental covariates.
|
2025-09-23 |
|
r-visreg
|
public |
Provides a convenient interface for constructing plots to visualize the fit of regression models arising from a wide variety of models in R ('lm', 'glm', 'coxph', 'rlm', 'gam', 'locfit', 'lmer', 'randomForest', etc.)
|
2025-09-23 |
|
r-intrinsicdimension
|
public |
A variety of methods for estimating intrinsic dimension of data sets (i.e the manifold or Hausdorff dimension of the support of the distribution that generated the data) as reviewed in Johnsson, K. (2016, ISBN:978-91-7623-921-6) and Johnsson, K., Soneson, C. and Fontes, M. (2015) <doi:10.1109/TPAMI.2014.2343220>. Furthermore, to evaluate the performance of these estimators, functions for generating data sets with given intrinsic dimensions are provided.
|
2025-09-23 |
|
r-dgeobj.utils
|
public |
Provides a function toolkit to facilitate reproducible RNA-Seq Differential Gene Expression (DGE) analysis (Law (2015) <doi:10.12688/f1000research.9005.3>). The tools include both analysis work-flow and utility functions: mapping/unit conversion, count normalization, accounting for unknown covariates, and more. This is a complement/cohort to the 'DGEobj' package that provides a flexible container to manage and annotate Differential Gene Expression analysis results.
|
2025-09-23 |
|
mapie
|
public |
A scikit-learn-compatible module for estimating prediction intervals.
|
2025-09-23 |
|
r-textrecipes
|
public |
Converting text to numerical features requires specifically created procedures, which are implemented as steps according to the 'recipes' package. These steps allows for tokenization, filtering, counting (tf and tfidf) and feature hashing.
|
2025-09-23 |
|
r-trycatchlog
|
public |
Advanced tryCatch() and try() functions for better error handling (logging, stack trace with source code references and support for post-mortem analysis via dump files).
|
2025-09-23 |
|
r-pathfindr.data
|
public |
This is a data-only package, containing data needed to run the CRAN package 'pathfindR', a package for enrichment analysis utilizing active subnetworks. This package contains protein-protein interaction network data, data related to gene sets and example input/output data.
|
2025-09-23 |
|
r-pdsce
|
public |
Compute and tune some positive definite and sparse covariance estimators.
|
2025-09-23 |
