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r-stpphawkes
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Estimation of model parameters for marked Hawkes process. Accounts for missing data in the estimation of the parameters. Technical details found in (Tucker et al., 2019 <DOI:10.1016/j.spasta.2018.12.004>).
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2025-09-23 |
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r-treebase
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Interface to the API for 'TreeBASE' <http://treebase.org> from 'R.' 'TreeBASE' is a repository of user-submitted phylogenetic trees (of species, population, or genes) and the data used to create them.
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2025-09-23 |
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r-emcluster
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EM algorithms and several efficient initialization methods for model-based clustering of finite mixture Gaussian distribution with unstructured dispersion in both of unsupervised and semi-supervised learning.
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2025-09-23 |
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r-ontologysimilarity
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Functions for calculating semantic similarities between ontological terms or sets of ontological terms based on term information content and assessing statistical significance of similarity in the context of a collection of sets of ontological terms.
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2025-09-23 |
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r-shinypanel
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Add shiny inputs with one or more inline buttons that grow and shrink with inputs. Also add tool tips to input buttons and styling and messages for input validation.
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2025-09-23 |
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r-ggmuller
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Create plots that combine a phylogeny and frequency dynamics. Phylogenetic input can be a generic adjacency matrix or a tree of class "phylo". Inspired by similar plots in publications of the labs of RE Lenski and JE Barrick. Named for HJ Muller (who popularised such plots) and H Wickham (whose code this package exploits).
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2025-09-23 |
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r-wrassp
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A wrapper around Michel Scheffers's 'libassp' (<http://libassp.sourceforge.net/>). The 'libassp' (Advanced Speech Signal Processor) library aims at providing functionality for handling speech signal files in most common audio formats and for performing analyses common in phonetic science/speech science. This includes the calculation of formants, fundamental frequency, root mean square, auto correlation, a variety of spectral analyses, zero crossing rate, filtering etc. This wrapper provides R with a large subset of 'libassp's signal processing functions and provides them to the user in a (hopefully) user-friendly manner.
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2025-09-23 |
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r-namedropr
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Provides 'visual citations' containing the metadata of a scientific paper and a 'QR' code. A 'visual citation' is a banner containing title, authors, journal and year of a publication. This package can create such banners based on 'BibTeX' and 'BibLaTeX' references and includes a QR code pointing to the 'DOI'. The resulting HTML object or PNG image can be included in a presentation to point the audience to good resources for further reading. Styling is possible via predefined designs or via custom 'CSS'. This package is not intended as replacement for proper reference manager packages, but a tool to enrich scientific presentation slides.
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2025-09-23 |
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r-grobblr
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A tool which allows users the ability to intuitively create flexible, reproducible portable document format reports comprised of aesthetically pleasing tables, images, plots and/or text.
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2025-09-23 |
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r-xlconnectjars
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Provides external JAR dependencies for the XLConnect package.
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2025-09-23 |
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r-fftwtools
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Provides a wrapper for several 'FFTW' functions. This package provides access to the two-dimensional 'FFT', the multivariate 'FFT', and the one-dimensional real to complex 'FFT' using the 'FFTW3' library. The package includes the functions fftw() and mvfftw() which are designed to mimic the functionality of the R functions fft() and mvfft(). The 'FFT' functions have a parameter that allows them to not return the redundant complex conjugate when the input is real data.
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2025-09-23 |
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r-radiant.data
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The Radiant Data menu includes interfaces for loading, saving, viewing, visualizing, summarizing, transforming, and combining data. It also contains functionality to generate reproducible reports of the analyses conducted in the application.
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2025-09-23 |
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r-schtools
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A collection of useful functions and example code created and used by the Schloss Lab for reproducible microbiome research. Perform common tasks like read files created by mothur <https://mothur.org/>, tidy up your microbiome data, and format R Markdown documents for publication. See the website <http://www.schlosslab.org/schtools/> for more information, documentation, and examples.
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2025-09-23 |
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r-tidygeocoder
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An intuitive interface for getting data from geocoder services.
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2025-09-23 |
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r-parmigene
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Parallel estimation of the mutual information based on entropy estimates from k-nearest neighbors distances and algorithms for the reconstruction of gene regulatory networks (Sales et al, 2011 <doi:10.1093/bioinformatics/btr274>).
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2025-09-23 |
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r-datapasta
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RStudio addins and R functions that make copy-pasting vectors and tables to text painless.
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2025-09-23 |
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r-ddalpha
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Contains procedures for depth-based supervised learning, which are entirely non-parametric, in particular the DDalpha-procedure (Lange, Mosler and Mozharovskyi, 2014 <doi:10.1007/s00362-012-0488-4>). The training data sample is transformed by a statistical depth function to a compact low-dimensional space, where the final classification is done. It also offers an extension to functional data and routines for calculating certain notions of statistical depth functions. 50 multivariate and 5 functional classification problems are included.
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2025-09-23 |
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sqlmesh
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Efficient data transformation and modeling framework that is backwards compatible with dbt.
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2025-09-23 |
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ez-zarr
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Give easy, high-level access to ome-zarr filesets.
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2025-09-23 |
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supabase-auth
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Python client implementation for Supabase Auth
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2025-09-23 |
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r-protviz
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Helps with quality checks, visualizations and analysis of mass spectrometry data, coming from proteomics experiments. The package is developed, tested and used at the Functional Genomics Center Zurich. We use this package mainly for prototyping, teaching, and having fun with proteomics data. But it can also be used to do data analysis for small scale data sets.
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2025-09-23 |
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r-dplr
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Perform tree-ring analyses such as detrending, chronology building, and cross dating. Read and write standard file formats used in dendrochronology.
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2025-09-23 |
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r-cobs
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Qualitatively Constrained (Regression) Smoothing Splines via Linear Programming and Sparse Matrices.
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2025-09-23 |
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r-loe
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public |
Local Ordinal embedding (LOE) is one of graph embedding methods for unweighted graphs.
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2025-09-23 |
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r-subselect
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A collection of functions which (i) assess the quality of variable subsets as surrogates for a full data set, in either an exploratory data analysis or in the context of a multivariate linear model, and (ii) search for subsets which are optimal under various criteria.
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2025-09-23 |
