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Package Name Access Summary Updated
r-tidyseurat public It creates an invisible layer that allow to see the 'Seurat' object as tibble and interact seamlessly with the tidyverse. 2025-09-24
r-webchem public Chemical information from around the web. This package interacts with a suite of web services for chemical information. Sources include: Alan Wood's Compendium of Pesticide Common Names, Chemical Identifier Resolver, ChEBI, Chemical Translation Service, ChemIDplus, ChemSpider, ETOX, Flavornet, NIST Chemistry WebBook, OPSIN, PAN Pesticide Database, PubChem, SRS, Wikidata. 2025-09-24
r-dot public Renders DOT diagram markup language in R and also provides the possibility to export the graphs in PostScript and SVG (Scalable Vector Graphics) formats. In addition, it supports literate programming packages such as 'knitr' and 'rmarkdown'. 2025-09-24
r-intrinsic public Provides functions to estimate the intrinsic dimension of a dataset via likelihood-based approaches. Specifically, the package implements the 'TWO-NN' and 'Gride' estimators and the 'Hidalgo' Bayesian mixture model. In addition, the first reference contains an extended vignette on the usage of the 'TWO-NN' and 'Hidalgo' models. References: Denti (2022+, <arXiv:2102.11425>); Allegra et al. (2020, <doi:10.1038/s41598-020-72222-0>); Denti et al. (2022, <doi:10.1038/s41598-022-20991-1>); Facco et al. (2017, <doi:10.1038/s41598-017-11873-y>); Santos-Fernandez et al. (2021, <doi:10.1038/s41598-022-20991-1>). 2025-09-24
r-networkd3 public Creates 'D3' 'JavaScript' network, tree, dendrogram, and Sankey graphs from 'R'. 2025-09-24
great-expectations public Always know what to expect from your data. 2025-09-24
oh-my-posh public Prompt theme engine for any shell 2025-09-24
r-nimble public A system for writing hierarchical statistical models largely compatible with 'BUGS' and 'JAGS', writing nimbleFunctions to operate models and do basic R-style math, and compiling both models and nimbleFunctions via custom- generated C++. 'NIMBLE' includes default methods for MCMC, particle filtering, Monte Carlo Expectation Maximization, and some other tools. The nimbleFunction system makes it easy to do things like implement new MCMC samplers from R, customize the assignment of samplers to different parts of a model from R, and compile the new samplers automatically via C++ alongside the samplers 'NIMBLE' provides. 'NIMBLE' extends the 'BUGS'/'JAGS' language by making it extensible: New distributions and functions can be added, including as calls to external compiled code. Although most people think of MCMC as the main goal of the 'BUGS'/'JAGS' language for writing models, one can use 'NIMBLE' for writing arbitrary other kinds of model-generic algorithms as well. A full User Manual is available at <https://r-nimble.org>. 2025-09-24
databricks-cli public A command line interface for Databricks 2025-09-24
apsg public APSG - python package for structural geologists 2025-09-24
r-imbalance public Class imbalance usually damages the performance of classifiers. Thus, it is important to treat data before applying a classifier algorithm. This package includes recent resampling algorithms in the literature: (Barua et al. 2014) <doi:10.1109/tkde.2012.232>; (Das et al. 2015) <doi:10.1109/tkde.2014.2324567>, (Zhang et al. 2014) <doi:10.1016/j.inffus.2013.12.003>; (Gao et al. 2014) <doi:10.1016/j.neucom.2014.02.006>; (Almogahed et al. 2014) <doi:10.1007/s00500-014-1484-5>. It also includes an useful interface to perform oversampling. 2025-09-24
r-knitcitations public Provides the ability to create dynamic citations in which the bibliographic information is pulled from the web rather than having to be entered into a local database such as 'bibtex' ahead of time. The package is primarily aimed at authoring in the R 'markdown' format, and can provide outputs for web-based authoring such as linked text for inline citations. Cite using a 'DOI', URL, or 'bibtex' file key. See the package URL for details. 2025-09-24
r-soupx public Quantify, profile and remove ambient mRNA contamination (the "soup") from droplet based single cell RNA-seq experiments. Implements the method described in Young et al. (2018) <doi:10.1101/303727>. 2025-09-24
r-sccore public Core utilities for single-cell RNA-seq data analysis. Contained within are utility functions for working with differential expression (DE) matrices and count matrices, a collection of functions for manipulating and plotting data via 'ggplot2', and functions to work with cell graphs and cell embeddings. Graph-based methods include embedding kNN cell graphs into a UMAP <doi:10.21105/joss.00861>, collapsing vertices of each cluster in the graph, and propagating graph labels. 2025-09-24
r-fportfolio public A collection of functions to optimize portfolios and to analyze them from different points of view. 2025-09-24
pytsql public pytsql allows to run mssql scripts, typically run via GUIs, via CLI. 2025-09-24
r-drake public A general-purpose computational engine for data analysis, drake rebuilds intermediate data objects when their dependencies change, and it skips work when the results are already up to date. Not every execution starts from scratch, there is native support for parallel and distributed computing, and completed projects have tangible evidence that they are reproducible. Extensive documentation, from beginner-friendly tutorials to practical examples and more, is available at the reference website <https://ropensci.github.io/drake/> and the online manual <https://ropenscilabs.github.io/drake-manual/>. 2025-09-24
r-gwidgetstcltk public Port of the gWidgets API to the tcltk package. 2025-09-24
r-sparsebn public Fast methods for learning sparse Bayesian networks from high-dimensional data using sparse regularization, as described in Aragam, Gu, and Zhou (2017) <arXiv:1703.04025>. Designed to handle mixed experimental and observational data with thousands of variables with either continuous or discrete observations. 2025-09-24
r-spotifyr public An R wrapper for pulling data from the 'Spotify' Web API <http://developer.spotify.com/web-api> in bulk. It allows you to enter an artist's name and retrieve their entire discography in seconds, along with audio features and lyrics from Genius Lyrics <https://www.genius.com>. You can also pull song and playlist information for a given 'Spotify' user. 2025-09-24
r-trackdown public Collaborative writing and editing of R Markdown (or Sweave) documents. The local .Rmd (or .Rnw) is uploaded as a plain-text file to Google Drive. By taking advantage of the easily readable Markdown (or LaTeX) syntax and the well-known online interface offered by Google Docs, collaborators can easily contribute to the writing and editing process. After integrating all authors’ contributions, the final document can be downloaded and rendered locally. 2025-09-24
smi-analysis public Scientific Python for data analysis at the Soft Matter Interface (SMI) beamline at NSLS-II 2025-09-24
r-anocva public Provides ANOCVA (ANalysis Of Cluster VAriability), a non-parametric statistical test to compare clustering structures with applications in functional magnetic resonance imaging data (fMRI). The ANOCVA allows us to compare the clustering structure of multiple groups simultaneously and also to identify features that contribute to the differential clustering. 2025-09-24
psygnal public Pure python implementation of Qt Signals 2025-09-24
cryspy public PNPD data analysis 2025-09-24

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