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Analyzing and interactively exploring large-scale single-cell RNA-seq datasets. 'pagoda2' primarily performs normalization and differential gene expression analysis, with an interactive application for exploring single-cell RNA-seq datasets. It performs basic tasks such as cell size normalization, gene variance normalization, and can be used to identify subpopulations and run differential expression within individual samples. 'pagoda2' was written to rapidly process modern large-scale scRNAseq datasets of approximately 1e6 cells. The companion web application allows users to explore which gene expression patterns form the different subpopulations within your data. The package also serves as the primary method for preprocessing data for conos, <https://github.com/kharchenkolab/conos>. This package interacts with data available through the 'p2data' package, which is available in a 'drat' repository. To access this data package, see the instructions at <https://github.com/kharchenkolab/pagoda2>. The size of the 'p2data' package is approximately 6 MB.

copied from cf-staging / r-pagoda2
Type Size Name Uploaded Downloads Labels
conda 1.2 MB | win-64/r-pagoda2-1.0.10-r41h78deb2a_2.conda  1 year and 5 months ago 390 main
conda 1.2 MB | osx-64/r-pagoda2-1.0.10-r43he9b8800_2.conda  1 year and 5 months ago 216 main
conda 1.2 MB | osx-64/r-pagoda2-1.0.10-r42he9b8800_2.conda  1 year and 5 months ago 192 main
conda 1.2 MB | linux-64/r-pagoda2-1.0.10-r43h08d816e_2.conda  1 year and 5 months ago 1174 main
conda 1.2 MB | linux-64/r-pagoda2-1.0.10-r42h08d816e_2.conda  1 year and 5 months ago 1192 main
conda 1.3 MB | win-64/r-pagoda2-1.0.10-r41h78deb2a_1.tar.bz2  2 years and 1 month ago 534 main
conda 1.3 MB | osx-64/r-pagoda2-1.0.10-r42hf5e6a41_1.tar.bz2  2 years and 1 month ago 71 main
conda 1.3 MB | osx-64/r-pagoda2-1.0.10-r41hf5e6a41_1.tar.bz2  2 years and 1 month ago 73 main
conda 1.3 MB | linux-64/r-pagoda2-1.0.10-r42h9f5de39_1.tar.bz2  2 years and 1 month ago 1595 main
conda 1.3 MB | linux-64/r-pagoda2-1.0.10-r41h9f5de39_1.tar.bz2  2 years and 1 month ago 1522 main
conda 1.3 MB | win-64/r-pagoda2-1.0.10-r40h399f8d5_0.tar.bz2  2 years and 6 months ago 694 main
conda 1.2 MB | win-64/r-pagoda2-1.0.10-r41h399f8d5_0.tar.bz2  2 years and 6 months ago 698 main
conda 1.3 MB | osx-64/r-pagoda2-1.0.10-r41h11a1ea8_0.tar.bz2  2 years and 6 months ago 84 main
conda 1.3 MB | osx-64/r-pagoda2-1.0.10-r40h11a1ea8_0.tar.bz2  2 years and 6 months ago 82 main
conda 1.3 MB | linux-64/r-pagoda2-1.0.10-r41h43535f1_0.tar.bz2  2 years and 6 months ago 1848 main
conda 1.3 MB | linux-64/r-pagoda2-1.0.10-r40h43535f1_0.tar.bz2  2 years and 6 months ago 1859 main

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