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Contains tools for rapidly computing distance matrices and clustering large sequence datasets using fast alignment-free k-mer counting and recursive k-means partitioning. See Vinga and Almeida (2003) <doi:10.1093/bioinformatics/btg005> for a review of k-mer counting methods and applications for biological sequence analysis.

copied from cf-staging / r-kmer
Type Size Name Uploaded Downloads Labels
conda 237.2 kB | win-64/r-kmer-1.1.2-r43h8ae3a7c_4.conda  4 months and 14 days ago 130 main
conda 238.7 kB | win-64/r-kmer-1.1.2-r44h8ae3a7c_4.conda  4 months and 14 days ago 123 main
conda 236.7 kB | osx-64/r-kmer-1.1.2-r44h25d921d_4.conda  4 months and 14 days ago 111 main
conda 235.8 kB | osx-64/r-kmer-1.1.2-r43h25d921d_4.conda  4 months and 14 days ago 120 main
conda 240.8 kB | linux-64/r-kmer-1.1.2-r43h0d4f4ea_4.conda  4 months and 14 days ago 574 main
conda 241.9 kB | linux-64/r-kmer-1.1.2-r44h0d4f4ea_4.conda  4 months and 14 days ago 562 main
conda 241.2 kB | win-64/r-kmer-1.1.2-r41ha856d6a_3.conda  1 year and 5 months ago 332 main
conda 234.8 kB | osx-64/r-kmer-1.1.2-r42hac7d2d5_3.conda  1 year and 5 months ago 134 main
conda 234.6 kB | osx-64/r-kmer-1.1.2-r43hac7d2d5_3.conda  1 year and 5 months ago 137 main
conda 239.6 kB | linux-64/r-kmer-1.1.2-r43ha503ecb_3.conda  1 year and 5 months ago 1177 main
conda 238.7 kB | linux-64/r-kmer-1.1.2-r42ha503ecb_3.conda  1 year and 5 months ago 1131 main
conda 273.9 kB | win-64/r-kmer-1.1.2-r41ha856d6a_2.tar.bz2  2 years and 1 month ago 534 main
conda 262.3 kB | osx-64/r-kmer-1.1.2-r41h49197e3_2.tar.bz2  2 years and 1 month ago 71 main
conda 262.3 kB | osx-64/r-kmer-1.1.2-r42h49197e3_2.tar.bz2  2 years and 1 month ago 71 main
conda 266.6 kB | linux-64/r-kmer-1.1.2-r41h7525677_2.tar.bz2  2 years and 1 month ago 1550 main
conda 266.5 kB | linux-64/r-kmer-1.1.2-r42h7525677_2.tar.bz2  2 years and 1 month ago 1552 main
conda 274.8 kB | win-64/r-kmer-1.1.2-r40ha856d6a_1.tar.bz2  3 years and 6 months ago 791 main
conda 268.3 kB | win-64/r-kmer-1.1.2-r41ha856d6a_1.tar.bz2  3 years and 6 months ago 766 main
conda 258.1 kB | osx-64/r-kmer-1.1.2-r40h9951f98_1.tar.bz2  3 years and 6 months ago 131 main
conda 258.1 kB | osx-64/r-kmer-1.1.2-r41h9951f98_1.tar.bz2  3 years and 6 months ago 134 main
conda 261.7 kB | linux-64/r-kmer-1.1.2-r41h03ef668_1.tar.bz2  3 years and 6 months ago 2139 main
conda 261.6 kB | linux-64/r-kmer-1.1.2-r40h03ef668_1.tar.bz2  3 years and 6 months ago 2084 main
conda 275.9 kB | win-64/r-kmer-1.1.2-r40h796a38f_1.tar.bz2  4 years and 6 months ago 1017 main
conda 276.2 kB | win-64/r-kmer-1.1.2-r36h796a38f_1.tar.bz2  4 years and 6 months ago 1016 main
conda 258.4 kB | osx-64/r-kmer-1.1.2-r36hc5da6b9_1.tar.bz2  4 years and 6 months ago 314 main
conda 258.0 kB | osx-64/r-kmer-1.1.2-r40hc5da6b9_1.tar.bz2  4 years and 6 months ago 330 main
conda 268.6 kB | linux-64/r-kmer-1.1.2-r40h0357c0b_1.tar.bz2  4 years and 6 months ago 2776 main
conda 268.7 kB | linux-64/r-kmer-1.1.2-r36h0357c0b_1.tar.bz2  4 years and 6 months ago 2771 main
conda 276.3 kB | win-64/r-kmer-1.1.2-r36h796a38f_0.tar.bz2  4 years and 6 months ago 1042 main
conda 258.3 kB | osx-64/r-kmer-1.1.2-r36hc5da6b9_0.tar.bz2  4 years and 6 months ago 311 main
conda 257.5 kB | osx-64/r-kmer-1.1.2-r35hc5da6b9_0.tar.bz2  4 years and 6 months ago 314 main
conda 268.8 kB | linux-64/r-kmer-1.1.2-r36h0357c0b_0.tar.bz2  4 years and 6 months ago 2798 main
conda 268.2 kB | linux-64/r-kmer-1.1.2-r35h0357c0b_0.tar.bz2  4 years and 6 months ago 2778 main

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