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conda-forge/r-ecodive

r-ecodive

Community

Computes alpha and beta diversity metrics using concurrent 'C' threads. Metrics include 'UniFrac', Faith's phylogenetic diversity, Bray-Curtis dissimilarity, Shannon diversity index, and many others. Also parses newick trees into 'phylo' objects and rarefies feature tables.

Copied fromcf-post-staging / r-ecodive

Installation

To install this package, run one of the following:

Conda
$conda install conda-forge::r-ecodive

Usage Tracking

2.2.1
2.2.0
2.1.0
2.0.0
1.0.0
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Downloads (Last 6 months): 0

About

Summary

Computes alpha and beta diversity metrics using concurrent 'C' threads. Metrics include 'UniFrac', Faith's phylogenetic diversity, Bray-Curtis dissimilarity, Shannon diversity index, and many others. Also parses newick trees into 'phylo' objects and rarefies feature tables.

Last Updated

Dec 14, 2025 at 14:05

License

MIT

Total Downloads

3.7K

Supported Platforms

macOS-64
win-64
linux-64

Home

https://cmmr.github.io/ecodive

GitHub Repository

https://github.com/cmmr/ecodive