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r-dendsort

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An implementation of functions to optimize ordering of nodes in a dendrogram, without affecting the meaning of the dendrogram. A dendrogram can be sorted based on the average distance of subtrees, or based on the smallest distance value. These sorting methods improve readability and interpretability of tree structure, especially for tasks such as comparison of different distance measures or linkage types and identification of tight clusters and outliers. As a result, it also introduces more meaningful reordering for a coupled heatmap visualization.

Installation

To install this package, run one of the following:

Conda
$conda install conda-forge::r-dendsort

Usage Tracking

0.3.4
0.3.3
2 / 8 versions selected
Downloads (Last 6 months): 0

About

Summary

An implementation of functions to optimize ordering of nodes in a dendrogram, without affecting the meaning of the dendrogram. A dendrogram can be sorted based on the average distance of subtrees, or based on the smallest distance value. These sorting methods improve readability and interpretability of tree structure, especially for tasks such as comparison of different distance measures or linkage types and identification of tight clusters and outliers. As a result, it also introduces more meaningful reordering for a coupled heatmap visualization.

Last Updated

Apr 20, 2021 at 13:58

License

GPL-2.0-or-later

Supported Platforms

noarch

Unsupported Platforms

linux-64 Last supported version: 0.3.3
win-64 Last supported version: 0.3.3
macOS-64 Last supported version: 0.3.3