maximinio
by Luca Massimino
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Packages
| Name | Latest Version | Summary | Updated | License |
|---|
| bioconductor-annotationdbi | 1.55.1 | Implements a user-friendly interface for querying SQLite-based annotation data packages. | Mar 25, 2025 | Artistic-2.0 |
| bioconductor-biocgenerics | 0.39.1 | The package defines many S4 generic functions used in Bioconductor. | Mar 25, 2025 | Artistic-2.0 |
| bioconductor-do.db | 2.9 | A set of annotation maps describing the entire Disease Ontology | Mar 25, 2025 | Artistic-2.0 |
| bioconductor-ensdb.hsapiens.v86 | 2.99.0 | Ensembl based annotation package | Mar 25, 2025 | Artistic-2.0 |
| bioconductor-flowcore | 2.1.4 | Provides S4 data structures and basic functions to deal with flow cytometry data. | Mar 25, 2025 | Artistic-2.0 |
| bioconductor-flowworkspace | 4.3.0 | This package is designed to facilitate comparison of automated gating methods against manual gating done in flowJo. This package allows you to import basic flowJo workspaces into BioConductor and replicate the gating from flowJo using the flowCore functionality. Gating hierarchies, groups of samples, compensation, and transformation are performed so that the output matches the flowJo analysis. | Mar 25, 2025 | file LICENSE (Restricts use) |
| bioconductor-genie3 | 1.14.0 | GEne Network Inference with Ensemble of trees | Jun 16, 2023 | GPL (>= 2) |
| bioconductor-genomeinfodb | 1.29.8 | Contains data and functions that define and allow translation between different chromosome sequence naming conventions (e.g., "chr1" versus "1"), including a function that attempts to place sequence names in their natural, rather than lexicographic, order. | Mar 25, 2025 | Artistic-2.0 |
| bioconductor-ncdfflow | 2.37.0 | Provides HDF5 storage based methods and functions for manipulation of flow cytometry data. | Mar 25, 2025 | Artistic-2.0 |
| bioconductor-opencyto | 2.3.0 | This package is designed to facilitate the automated gating methods in sequential way to mimic the manual gating strategy. | Mar 25, 2025 | Artistic-2.0 |
| bioconductor-universalmotif | 1.11.16 | Allows for importing most common motif types into R for use by functions provided by other Bioconductor motif-related packages. Motifs can be exported into most major motif formats from various classes as defined by other Bioconductor packages. A suite of motif and sequence manipulation and analysis functions are included, including enrichment, comparison, P-value calculation, shuffling, trimming, higher-order motifs, and others. | Mar 25, 2025 | GPL-3 |
| macs3 | 3.0.0a6 | Model Based Analysis for ChIP-Seq data | Mar 25, 2025 | BSD |
| r-assertthat | 0.2.1 | An extension to stopifnot() that makes it easy to declare the pre and post conditions that you code should satisfy, while also producing friendly error messages so that your users know what's gone wrong. | Mar 25, 2025 | GPL-3 |
| r-bh | 1.75.0_0 | Boost provides free peer-reviewed portable C++ source libraries. A large part of Boost is provided as C++ template code which is resolved entirely at compile-time without linking. This package aims to provide the most useful subset of Boost libraries for template use among CRAN packages. By placing these libraries in this package, we offer a more efficient distribution system for CRAN as replication of this code in the sources of other packages is avoided. As of release 1.75.0-0, the following Boost libraries are included: 'accumulators' 'algorithm' 'align' 'any' 'atomic' 'beast' 'bimap' 'bind' 'circular_buffer' 'compute' 'concept' 'config' 'container' 'date_time' 'detail' 'dynamic_bitset' 'exception' 'flyweight' 'foreach' 'functional' 'fusion' 'geometry' 'graph' 'heap' 'icl' 'integer' 'interprocess' 'intrusive' 'io' 'iostreams' 'iterator' 'math' 'move' 'mp11' 'mpl' 'multiprecision' 'numeric' 'pending' 'phoenix' 'polygon' 'preprocessor' 'propery_tree' 'random' 'range' 'scope_exit' 'smart_ptr' 'sort' 'spirit' 'tuple' 'type_traits' 'typeof' 'unordered' 'utility' 'uuid'. | Mar 25, 2025 | BSL-1.0 |
| r-bioinstaller | 0.3.7 | Can be used to integrate massive bioinformatics resources, such as tool/script and database. It provides the R functions and Shiny web application. Hundreds of bioinformatics tool/script and database have been included. | Mar 25, 2025 | MIT |
| r-bitops | 1.0_7 | Functions for bitwise operations on integer vectors. | Mar 25, 2025 | GPL-2 |
| r-cellranger | 1.1.0 | Helper functions to work with spreadsheets and the "A1:D10" style of cell range specification. | Mar 25, 2025 | MIT |
| r-colorspace | 2.0_2 | Carries out mapping between assorted color spaces including RGB, HSV, HLS, CIEXYZ, CIELUV, HCL (polar CIELUV), CIELAB, and polar CIELAB. Qualitative, sequential, and diverging color palettes based on HCL colors are provided along with corresponding ggplot2 color scales. Color palette choice is aided by an interactive app (with either a Tcl/Tk or a shiny graphical user interface) and shiny apps with an HCL color picker and a color vision deficiency emulator. Plotting functions for displaying and assessing palettes include color swatches, visualizations of the HCL space, and trajectories in HCL and/or RGB spectrum. Color manipulation functions include: desaturation, lightening/darkening, mixing, and simulation of color vision deficiencies (deutanomaly, protanomaly, tritanomaly). Details can be found on the project web page at <https://colorspace.R-Forge.R-project.org/> and in the accompanying scientific paper: Zeileis et al. (2020, Journal of Statistical Software, <doi:10.18637/jss.v096.i01>). | Mar 25, 2025 | BSD_3_clause |
| r-combat | 0.0.4 | Genome-wide association studies (GWAS) have been widely used for identifying common variants associated with complex diseases. Due to the small effect sizes of common variants, the power to detect individual risk variants is generally low. Complementary to SNP-level analysis, a variety of gene-based association tests have been proposed. However, the power of existing gene-based tests is often dependent on the underlying genetic models, and it is not known a priori which test is optimal. Here we proposed COMBined Association Test (COMBAT) to incorporate strengths from multiple existing gene-based tests, including VEGAS, GATES and simpleM. Compared to individual tests, COMBAT shows higher overall performance and robustness across a wide range of genetic models. The algorithm behind this method is described in Wang et al (2017) <doi:10.1534/genetics.117.300257>. | Mar 25, 2025 | GPL-2 |
| r-configr | 0.3.5 | Implements the JSON, INI, YAML and TOML parser for R setting and writing of configuration file. The functionality of this package is similar to that of package 'config'. | Mar 25, 2025 | MIT |
| r-crayon | 1.4.1 | Colored terminal output on terminals that support 'ANSI' color and highlight codes. It also works in 'Emacs' 'ESS'. 'ANSI' color support is automatically detected. Colors and highlighting can be combined and nested. New styles can also be created easily. This package was inspired by the 'chalk' 'JavaScript' project. | Mar 25, 2025 | MIT |
| r-cytoexplorer | 1.1.0 | An intuitive and interactive approach to analysing cytometry data in R. This package has been developed under ROpenSci gudelines to integrate conventional and cutting edge cytometry analysis tools under a unified open-source framework. | Mar 25, 2025 | GPL-2 |
| r-dbplyr | 2.1.1 | A 'dplyr' back end for databases that allows you to work with remote database tables as if they are in-memory data frames. Basic features works with any database that has a 'DBI' back end; more advanced features require 'SQL' translation to be provided by the package author. | Mar 25, 2025 | MIT |
| r-dichromat | 2.0_0 | Collapse red-green or green-blue distinctions to simulate the effects of different types of color-blindness. | Mar 25, 2025 | GPL-2 |
| r-dir.expiry | 0.99.4 | Implements an expiration system for access to versioned directories. Directories that have not been accessed by a registered function within a certain time frame are deleted. This aims to reduce disk usage by eliminating obsolete caches generated by old versions of packages. | Mar 25, 2025 | GPL-3 |