epi2melabs
by epi2melabs
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Packages
| Name | Latest Version | Summary | Updated | License |
|---|
| aplanat | 0.6.15 | Bokeh plotting API, with bio-focussed extras. | Mar 25, 2025 | Mozilla Public License 2.0 |
| barcoder | 5.0.11 | Demultiplexing of Sequencing Reads | Mar 25, 2025 | Nanopore Product Terms and Conditions |
| epi2melabs | 0.0.43 | Helper library for miscellaneous EPI2ME Labs functionality | Mar 25, 2025 | Mozilla Public License 2.0 |
| ezcharts | 0.3.6 | eCharts plotting API | Mar 25, 2025 | Mozilla Public License 2.0 |
| fastcat | 0.10.2 | Concatenate fast/a/q/gz and calculate basic statistics | Mar 25, 2025 | Mozilla Public License 2.0 |
| flye | 2.9.1 | Fast and accurate de novo assembler for single molecule sequencing reads | Mar 25, 2025 | BSD-3-Clause |
| htslib | 1.16 | C library for high-throughput sequencing data formats. | Mar 25, 2025 | MIT |
| k8 | 0.2.5 | Lightweight JavaScript shell based on Google's V8 JavaScript engine | Mar 25, 2025 | MIT |
| kraken2-server | 0.1.3 | Server implementation of kraken2 | Mar 25, 2025 | MIT |
| libsass | 0.21.0 | A straightforward binding of libsass for Python. Compile Sass/SCSS in Python with no Ruby stack at all! | Mar 25, 2025 | MIT |
| mbtools | 0.1.0 | mbtools - toolkit for working with modification BAM files | Mar 25, 2025 | MIT |
| minimap2 | 2.24 | A versatile pairwise aligner for genomic and spliced nucleotide sequences. | Mar 25, 2025 | MIT |
| modbam2bed | 0.9.5 | Summarise BAM files containing modified-base information to bedMethyl format. | Mar 25, 2025 | Mozilla Public License 2.0 |
| nextclade-cli | 0.13.0 | Clade assignment, mutation calling, and sequence quality checks | Mar 25, 2025 | MIT |
| np-artic | 1.3.0 | ARTIC pipeline - which modifications from Oxford Nanopore Technologies | Mar 25, 2025 | MIT |
| plannotate | 1.0.3 | Webserver and command line tool for annotating engineered plasmids | Mar 25, 2025 | GPLv3 |
| pore-c-py | 2.0.3 | Python scripts for working with Pore-C data | Mar 25, 2025 | Mozilla Public License 2.0 |
| pychopper | 2.7.2 | A tool to identify, orient and rescue full length cDNA reads from nanopore data. | Mar 25, 2025 | Mozilla Public License 2.0 |
| pysam | 0.20.0 | Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix. | Mar 25, 2025 | MIT |
| samtools | 1.16.1 | Tools for dealing with SAM, BAM and CRAM files | Mar 25, 2025 | MIT |
| seqkit | 2.3.1 | a cross-platform and ultrafast toolkit for FASTA/Q file manipulation | Mar 25, 2025 | MIT |
| sigfig | 1.0.3 | Python library for rounding numbers (with expected results) | Mar 25, 2025 | GPL3 |