CMD + K

bioconductor-granulator

Community

Rapid benchmarking of methods for *in silico* deconvolution of bulk RNA-seq data

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-granulator

Usage Tracking

1.14.0
1.10.0
1.8.0
1.6.0
1.2.0
5 / 8 versions selected
Downloads (Last 6 months): 0

Description

granulator is an R package for the cell type deconvolution of heterogeneous tissues based on bulk RNA-seq data or single cell RNA-seq expression profiles. The package provides a unified testing interface to rapidly run and benchmark multiple state-of-the-art deconvolution methods. Data for the deconvolution of peripheral blood mononuclear cells (PBMCs) into individual immune cell types is provided as well.

About

Summary

Rapid benchmarking of methods for *in silico* deconvolution of bulk RNA-seq data

Last Updated

Dec 14, 2024 at 14:27

License

GPL-3

Total Downloads

10.1K

Supported Platforms

noarch