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bioconductor-gcapc

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GC Aware Peak Caller

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-gcapc

Usage Tracking

1.30.0
1.26.0
1.24.0
1.22.0
1.18.0
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Downloads (Last 6 months): 0

Description

Peak calling for ChIP-seq data with consideration of potential GC bias in sequencing reads. GC bias is first estimated with generalized linear mixture models using effective GC strategy, then applied into peak significance estimation.

About

Summary

GC Aware Peak Caller

Last Updated

Dec 30, 2024 at 02:11

License

GPL-3

Total Downloads

21.4K

Supported Platforms

noarch