bcbio
by bcbio package collection (Organization)
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Packages
| Name | Latest Version | Summary | Updated | License |
|---|
| pysam | 0.8.4pre0 | — | Mar 25, 2025 | MIT |
| bx-python | 0.7.3 | Toolkit to enable rapid implementation of genome scale analyses. | Mar 25, 2025 | MIT |
| cpat | 1.2.2 | Coding Potential Assessment Tool | Mar 25, 2025 | GNU |
| ipython-cluster-helper | 0.5.0 | Tool to easily start up an IPython cluster on different schedulers | Mar 25, 2025 | MIT |
| hmmlearn | 20150818 | Hidden Markov Models in Python, with scikit-learn like API | Mar 25, 2025 | BSD |
| cnvkit | 0.7.3dev0 | Copy number variant detection from targeted DNA sequencing | Mar 25, 2025 | MIT |
| pyvcf | 0.6.7 | — | Mar 25, 2025 | BSD |
| netifaces | 0.10.4 | — | Mar 25, 2025 | MIT |
| pybedtools | 0.6.9 | — | Mar 25, 2025 | MIT |
| bcbio-nextgen | 0.9.5 | Validated, scalable, community developed variant calling and RNA-seq analysis | Mar 25, 2025 | MIT |
| pyfaidx | 0.4.1.1 | efficient pythonic random access to fasta subsequences | Mar 25, 2025 | MIT |
| gffutils | 0.8.4rc1 | GFF and GTF file manipulation and interconversion | Mar 25, 2025 | MIT |
| bcbio-nextgen-vm | 0.1.0a | Run bcbio-nextgen genomic sequencing analyses using isolated containers and virtual machines | Mar 25, 2025 | MIT |
| htseq | 0.6.1 | A framework to process and analyze data from high-throughput sequencing (HTS) assays | Mar 25, 2025 | GPLv3 |
| elasticluster | 0.1.3bcbio | Create, manage and setup computing clusters hosted on a public or private cloud infrastructure. | Mar 25, 2025 | GPL |
| python-graph-core | 1.8.2 | — | Mar 25, 2025 | MIT |
| seqcluster_lite | 1.1.13 | small RNA-seq pipeline for bcbio | Mar 25, 2025 | MIT License |
| metasv | 0.4.0 | An accurate and integrative structural-variant caller for next generation sequencing | Mar 25, 2025 | MIT |
| oauth2client | 1.4.6 | — | Mar 25, 2025 | Apache 2.0 |
| uritemplate | 0.6 | — | Mar 25, 2025 | Apache 2.0 |
| phylowgs | 20150714 | Application for inferring subclonal composition and evolution from whole-genome sequencing data | Mar 25, 2025 | GPLv3 |
| pythonpy | 0.4.2 | the swiss army knife of the command line | Mar 25, 2025 | — |
| google-api-python-client | 1.3.2 | — | Mar 25, 2025 | Apache 2.0 |
| python-graph-dot | 1.8.2 | — | Mar 25, 2025 | MIT |
| ete2 | 2.2.1072 | Phylogenetic tree analyses and exploration | Mar 25, 2025 | GPLv3 |