alubbock
by Alex Lubbock
by Alex Lubbock
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| Name | Latest Version | Summary | Updated | License |
|---|
| pygraphviz | 1.5 | PyGraphviz is a Python interface to the Graphviz graph layout and visualization package. | Mar 25, 2025 | BSD |
| graphviz | 2.41 | Graphviz is open source graph visualization software | Mar 25, 2025 | CPL 1.0 |
| nfsim | 1.14.1 | NFsim is a network-free stochastic simulator for biochemical reaction networks | Mar 25, 2025 | GPL |
| bionetgen | 2.9.1 | BioNetGen is software for the specification and simulation of rule-based models of biochemical systems | Mar 25, 2025 | GPL |
| atomizer | 1.0 | Project for the translation of SBML files into BNGL files | Mar 25, 2025 | — |
| kappa | 4.0 | Kappa is a rule-based language for modeling systems of interacting agents. | Mar 25, 2025 | LGPL-3 |
| pysb | 1.17.0 | PySB (pronounced "Pie Ess Bee") is a framework for building rule-based mathematical models of biochemical systems. It works nicely with scientific Python libraries such as NumPy, SciPy and SymPy for model simulation and analysis. | Feb 17, 2026 | BSD |
| stochkit | 2.0.13 | StochKit is an extensible stochastic simulation framework developed in C++ that aims to make stochastic simulation accessible to practicing biologists and chemists, while remaining open to extension via new stochastic and multiscale algorithms. | Mar 25, 2025 | GPL-3 |
| stochkit-lite | 2.0.10 | StochKit is an extensible stochastic simulation framework developed in C++ that aims to make stochastic simulation accessible to practicing biologists and chemists, while remaining open to extension via new stochastic and multiscale algorithms. | Mar 25, 2025 | GPL-3 |
| PyDAS | 1.0.2 | A Python wrapper to several differential algebraic system solvers | Mar 25, 2025 | — |
| cupsoda | v1.1_986c895 | cupSODA is a black-box deterministic simulator of biological systems for NVIDIA graphics cards (GPUs), using the CUDA framework. | Mar 25, 2025 | BSD |