alienzj
by alienzj
Most Popular
Downloads
Usage Instructions
To install packages from this channel, use the channel temporarily with conda or add it to your .condarc file for configured ongoing access. Learn more
- Temporary
- Configured
Packages
| Name | Latest Version | Summary | Updated | License |
|---|
| assembly-stats | 1.0.1 | Get assembly statistics from FASTA and FASTQ files, [email protected] | Mar 25, 2025 | GPLv3 |
| cloudspades | 3.12.0 | cloudSPAdes assembly of synthetic long reads using de Bruijn graphs | Mar 25, 2025 | GPLv2 |
| fastani | 1.1 | FastANI is developed for fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI). | Mar 25, 2025 | Apache-2.0 |
| fastp | 0.19.6 | A FASTQ preprocessor with full features (QC/adapters/trimming/filtering/splitting...) | Mar 25, 2025 | MIT |
| gfatools | 0.4 | Tools for manipulating sequence graphs in the GFA and rGFA formats | Mar 25, 2025 | — |
| metamlp | 0.1.0 | MetaMLP is a fast approach to annotate metagenomic datasets against a protein reference database. | Mar 25, 2025 | MIT |
| metapi | 1.0.1 | A general metagenomics data mining system focus on robust microbiome research | Mar 25, 2025 | GPL3 |
| msort | 1.1.1 | msort, sort file rows by multiple field, written by Ruan Jue<[email protected]> | Mar 25, 2025 | MIT |
| nwalign3 | 0.1.2 | Updated version of nwalign with Python 3.x compatibility. | Mar 25, 2025 | BSD |
| pyani | 0.3.0 | pyani provides a package and script for calculation of genome-scale average nucleotide identity. | Mar 25, 2025 | MIT |
| pyright | 1.1.122 | Type checker for the Python language | Mar 25, 2025 | MIT |
| quantpi | 0.2.0 | A general profiling system focus on robust microbiome research | Mar 25, 2025 | GPL-3.0-only |
| r-adegraphics | 1.0_15 | Graphical functionalities for the representation of multivariate data. It is a complete re-implementation of the functions available in the 'ade4' package. | Mar 25, 2025 | GPL (>= 2) |
| r-adespatial | 0.3_7 | Tools for the multiscale spatial analysis of multivariate data. Several methods are based on the use of a spatial weighting matrix and its eigenvector decomposition (Moran's Eigenvectors Maps, MEM). Several approaches are described in the review Dray et al (2012) <doi:10.1890/11-1183.1>. | Mar 25, 2025 | GPL (>= 2) |
| r-codaseq | 0.99.4 | — | Mar 25, 2025 | — |
| r-packfor | 0.0.8 | — | Mar 25, 2025 | — |
| r-virfinder | 1.1 | — | Mar 25, 2025 | — |
| r-vita | 1.0.0 | Implements the novel testing approach by Janitza et al.(2015) <http://nbn-resolving.de/urn/resolver.pl?urn=nbn:de:bvb:19-epub-25587-4> for the permutation variable importance measure in a random forest and the PIMP-algorithm by Altmann et al.(2010) <doi:10.1093/bioinformatics/btq134>. Janitza et al.(2015) <http://nbn-resolving.de/urn/resolver.pl?urn=nbn:de:bvb:19-epub-25587-4> do not use the "standard" permutation variable importance but the cross-validated permutation variable importance for the novel test approach. The cross-validated permutation variable importance is not based on the out-of-bag observations but uses a similar strategy which is inspired by the cross-validation procedure. The novel test approach can be applied for classification trees as well as for regression trees. However, the use of the novel testing approach has not been tested for regression trees so far, so this routine is meant for the expert user only and its current state is rather experimental. | Mar 25, 2025 | GPL (>= 2) |
| ribodetector | 0.2.3 | Accurate and rapid RiboRNA sequences Detector based on deep learning | Mar 25, 2025 | GPL-3 |
| seqtk | 1.3 | Seqtk is a fast and lightweight tool for processing sequences in the FASTA or FASTQ format | Mar 25, 2025 | MIT |
| skesa | 2.3.0 | Strategic Kmer Extension for Scrupulous Assemblies | Mar 25, 2025 | Public Domain |
| soapnuke | 2.0.6 | SOAPnuke is a novel analysis tool developed for ultrafast quality control and preprocessing of high throughput sequencing (HTS) data. | Mar 25, 2025 | GPLv3 |
| sshtk | 0.1.0 | SSH toolkit | Mar 25, 2025 | GPL3 |
| traitar | 1.1.1 | From genomes to phenotypes: Traitar, the microbial trait analyzer | Mar 25, 2025 | GNU General Public License v3 (GPLv3) |
| yaml-cpp | 0.6.2 | YAML parser and emitter in C++, writtend around the YAML 1.2 spec | Mar 25, 2025 | MIT |