cgr-lab
by Gubry-Rangin Lab (Organization)
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Packages
| Name | Latest Version | Summary | Updated | License |
|---|
| basta | 1.4.1 | BAsic Sequence Taxonomy Annotation | Mar 25, 2025 | GPL3 |
| r-metagmisc | 0.6.0.9000 | Miscellaneous functions for metagenomic analysis | Aug 29, 2025 | MIT |
| r-microniche | 1.0.0 | Measures niche breadth and overlap of microbial taxa from large matrices. | Mar 25, 2025 | GPL-2 |
| r-microshades | 1.12 | A custom color palette for improving data visualization | Mar 25, 2025 | MIT |
| r-microviz | 0.12.7 | Microbiome Data Analysis and Visualization | Aug 29, 2025 | AGPL-3 |
| r-nls.multstart | 1.3.0 | Non-linear least squares regression with the Levenberg-Marquardt algorithm using multiple starting values for increasing the chance that the minimum found is the global minimum. | Mar 25, 2025 | GPL-3 |
| r-pairwise.adonis | 0.4.1 | Pairwise Multilevel Comparison using Adonis | Sep 30, 2025 | AGPL-3 |
| r-phyloseq.mate | 0.0.0.2000 | Various functions for working with phyloseq objects | Sep 1, 2025 | GPL-3 |
| r-phyloseq.pal | 0.0.0.9000 | Functions For Plotting and Statistical Testing With Phyloseq Objects | Mar 25, 2025 | MIT |
| r-rrphylo | 2.8.0 | Functions for phylogenetic analysis. | Mar 25, 2025 | GPL-2 |
| r-rtpc | 1.0.4 | Helps to fit thermal performance curves (TPCs). 'rTPC' contains 26 model formulations previously used to fit TPCs and has helper functions to set sensible start parameters, upper and lower parameter limits and estimate parameters useful in downstream analyses, such as cardinal temperatures, maximum rate and optimum temperature. See Padfield et al. (2021) <doi:10.1111/2041-210X.13585>. | Mar 25, 2025 | GPL-3 |
| r-speedyseq | 0.5.3.9021 | Faster implementations of phyloseq functions. | Mar 25, 2025 | AGPL-3 |