| modbamtools | 0.5.0 | A set of tools to manipulate and visualize data from base modification bam files | Oct 29, 2025 | Apache-2.0 |
| beyondcell | 2.2.1 | — | Mar 25, 2025 | — |
| r-seuratwrappers | 0.1.0 | SeuratWrappers is a collection of community-provided methods and extensions for Seurat, curated by the Satija Lab at NYGC. These methods comprise functionality not presently found in Seurat, and are able to be updated much more frequently. | Mar 25, 2025 | GPL-3 |
| r-beyondcell | 2.2.2 | — | Mar 25, 2025 | — |
| r-lisi | 1.0 | This method was designed to assess how well mixed cells with different labels are in single cell RNAseq. This method uses the Inverse Simpson's Index to compute diversity of each cell's local neighborhood. | Mar 25, 2025 | GPL-3 |
| r-bnstruct | 1.0.8 | Bayesian Network Structure Learning from Data with Missing Values. The package implements the Silander-Myllymaki complete search, the Max-Min Parents-and-Children, the Hill-Climbing, the Max-Min Hill-climbing heuristic searches, and the Structural Expectation-Maximization algorithm. Available scoring functions are BDeu, AIC, BIC. The package also implements methods for generating and using bootstrap samples, imputed data, inference. | Mar 25, 2025 | GPL-2 |
| relion | v5.0.0beta | Image-processing software for cryo-electron microscopy | Mar 25, 2025 | GPLv2 |
| r-scevan | 1.0.1 | R package that starting from the raw count matrix of scRNA data automatically classifies the cells present in the biopsy by segregating non-malignant cells of tumor microenviroment from the malignant cells and also characterizes the clonal structure of these malignant cells. | Mar 25, 2025 | GPL-2 |
| r-estimate | 1.0.13 | Estimate of Stromal and Immune Cells in Malignant Tumor Tissues from Expression Data | Mar 25, 2025 | BSD |
| r-yagst | 2017.08.25 | This is a collection of wrappers to the Wilcoxon test to run competitive gene set tests and comparison between imbalanced datasets. | Mar 25, 2025 | GPL-3 |
| r-mixedclust | 1.0.2 | mixedClust | Mar 25, 2025 | BSD |
