btrspg
by btrspg
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Packages
| Name | Latest Version | Summary | Updated | License |
|---|
| animal-courier | 0.1.6.alpha | An open source shell run control | Mar 25, 2025 | MIT |
| shikamaru-gatk3 | 3.8 | The full Genome Analysis Toolkit (GATK) framework, license restricted. | Mar 25, 2025 | https://www.broadinstitute.org/gatk/about/#licensing |
| shikamaru-samtools | 1.9 | Tools for dealing with SAM, BAM and CRAM files | Mar 25, 2025 | MIT |
| shikamaru-novoalign | 3.09.00 | Powerful tool designed for mapping of short reads onto a reference genome from Illumina, Ion Torrent, and 454 NGS platforms | Mar 25, 2025 | Commercial (requires license for commercial use or for features likes multi-threading) |
| shikamaru-gatk4 | 4.0.12.0 | Genome Analysis Toolkit (GATK4) | Mar 25, 2025 | BSD-3-Clause |
| python-unipath | 1.1 | An object-oriented approach to file/directory operations | Mar 25, 2025 | MIT License (MIT) |
| shikamaru-picard | 2.18.21 | Java tools for working with NGS data in the BAM format | Mar 25, 2025 | MIT |
| shikamaru-bedtools | 2.27.1 | A powerful toolset for genome arithmetic | Mar 25, 2025 | GPL v2 |
| python-simpleaes | 1.0 | encryption and decryption for mere mortals | Mar 25, 2025 | — |
| shikamaru-fastqc | 0.11.8 | A quality control tool for high throughput sequence data. | Mar 25, 2025 | GPL >=3 |
| shikamaru-bwa | 0.7.17 | The BWA read mapper. | Mar 25, 2025 | GPL3 |
| shikamaru-fastp | 0.19.5 | A FASTQ preprocessor with full features (QC/adapters/trimming/filtering/splitting...) | Mar 25, 2025 | MIT |
| shikamaru-tabix | 0.2.6 | A set of tools written in Perl and C++ for working with VCF files. | Mar 25, 2025 | BSD |
| shikamaru-multiqc | 1.7 | Create aggregate bioinformatics analysis reports across many samples and tools | Mar 25, 2025 | GNU General Public License v3 (GPLv3) |
| shikamaru-prince | 1.2 | PRINCE estimates Variable Number Tandem Repeats (VNTR) copy number from raw next generation sequencing (NGS) data. | Mar 25, 2025 | MIT |
| shikamaru-htslib | 1.9 | C library for high-throughput sequencing data formats. | Mar 25, 2025 | MIT |