| Package Name | Access | Summary | Updated |
|---|---|---|---|
| animal-courier | public | An open source shell run control | 2025-03-25 |
| shikamaru-prince | public | PRINCE estimates Variable Number Tandem Repeats (VNTR) copy number from raw next generation sequencing (NGS) data. | 2025-03-25 |
| shikamaru-novoalign | public | Powerful tool designed for mapping of short reads onto a reference genome from Illumina, Ion Torrent, and 454 NGS platforms | 2025-03-25 |
| shikamaru-samtools | public | Tools for dealing with SAM, BAM and CRAM files | 2025-03-25 |
| shikamaru-multiqc | public | Create aggregate bioinformatics analysis reports across many samples and tools | 2025-03-25 |
| shikamaru-picard | public | Java tools for working with NGS data in the BAM format | 2025-03-25 |
| shikamaru-tabix | public | A set of tools written in Perl and C++ for working with VCF files. | 2025-03-25 |
| shikamaru-gatk4 | public | Genome Analysis Toolkit (GATK4) | 2025-03-25 |
| shikamaru-htslib | public | C library for high-throughput sequencing data formats. | 2025-03-25 |
| shikamaru-gatk3 | public | The full Genome Analysis Toolkit (GATK) framework, license restricted. | 2025-03-25 |
| python-simpleaes | public | encryption and decryption for mere mortals | 2025-03-25 |
| python-unipath | public | An object-oriented approach to file/directory operations | 2025-03-25 |
| shikamaru-fastqc | public | A quality control tool for high throughput sequence data. | 2025-03-25 |
| shikamaru-fastp | public | A FASTQ preprocessor with full features (QC/adapters/trimming/filtering/splitting...) | 2025-03-25 |
| shikamaru-bedtools | public | A powerful toolset for genome arithmetic | 2025-03-25 |
| shikamaru-bwa | public | The BWA read mapper. | 2025-03-25 |
