biocore / packages

Package Name Access Summary Updated
deblur public No Summary 2018-09-14
q2-fragment-insertion public No Summary 2018-07-17
fragment-insertion public No Summary 2018-06-20
gneiss public Compositional Analysis and Visualization toolkit 2018-06-12
diamond public a BLAST-compatible local aligner for mapping protein and translated DNA query sequences against a protein reference database 2017-09-25
unifrac public UniFrac 2017-09-22
calour public No Summary 2017-09-16
sortmerna public SortMeRNA is a biological sequence analysis tool for filtering, mapping and OTU-picking NGS reads. 2017-05-04
biom-format public Biological Observation Matrix (BIOM) format 2017-04-28
micronota public (meta)genomic annotation tool 2017-04-28
transtermhp public No Summary 2017-03-23
q2-deblur public No Summary 2017-03-22
psipred public Accurate protein secondary structure prediction 2017-03-01
disopred public Protein intrinsic disorder prediction 2017-02-27
memsat-svm public SVM Transmembrane protein structure prediction 2017-02-27
blast-legacy public BLAST finds regions of similarity between biological sequences. 2017-02-23
scikit-bio public Data structures, algorithms and educational resources for bioinformatics. 2016-12-01
emperor public Emperor 2016-12-01
minced public Mining CRISPRs in Environmental Datasets 2016-12-01
aragorn public ARAGORN detects tRNA, mtRNA, and tmRNA genes. 2016-12-01
swarm public swarm, A robust and fast clustering method for amplicon-based studies 2016-12-01
rdp-tools public Metaproject for RDP Tools 2016-12-01
vsearch public VSEARCH, a versatile open source tool for metagenomics 2016-12-01
fasttree public FastTree -- inferring approximately-maximum-likelihood trees for large multiple sequence alignments. 2016-12-01
blast-plus public BLAST finds regions of similarity between biological sequences. 2016-12-01
mafft public Multiple alignment program for amino acid or nucleotide sequences 2016-12-01
prodigal public Fast, reliable protein-coding gene prediction for prokaryotic genomes. 2016-12-01
infernal public Infernal ("INFERence of RNA ALignment") is for searching DNA sequence databases for RNA structure and sequence similarities. 2016-12-01
hmmer public Biosequence analysis using profile hidden Markov models 2016-12-01

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