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biocore / packages

Package Name Access Summary Updated
deblur public No Summary 2023-06-16
q2-fragment-insertion public No Summary 2023-06-16
fragment-insertion public No Summary 2023-06-16
gneiss public Compositional Analysis and Visualization toolkit 2023-06-16
unifrac public UniFrac 2023-06-16
calour public No Summary 2023-06-16
biom-format public Biological Observation Matrix (BIOM) format 2023-06-16
disopred public Protein intrinsic disorder prediction 2023-06-16
memsat-svm public SVM Transmembrane protein structure prediction 2023-06-16
psipred public Accurate protein secondary structure prediction 2023-06-16
q2-deblur public No Summary 2023-06-16
transtermhp public No Summary 2023-06-16
emperor public Emperor 2023-06-16
aragorn public ARAGORN detects tRNA, mtRNA, and tmRNA genes. 2023-06-16
minced public Mining CRISPRs in Environmental Datasets 2023-06-16
micronota public (meta)genomic annotation tool 2023-06-16
blast-legacy public BLAST finds regions of similarity between biological sequences. 2023-06-16
scikit-bio public Data structures, algorithms and educational resources for bioinformatics. 2023-06-16
rdp-tools public Metaproject for RDP Tools 2023-06-16
swarm public swarm, A robust and fast clustering method for amplicon-based studies 2023-06-16
vsearch public VSEARCH, a versatile open source tool for metagenomics 2023-06-16
fasttree public FastTree -- inferring approximately-maximum-likelihood trees for large multiple sequence alignments. 2023-06-16
diamond public a BLAST-compatible local aligner for mapping protein and translated DNA query sequences against a protein reference database 2023-06-16
mafft public Multiple alignment program for amino acid or nucleotide sequences 2023-06-16
blast-plus public BLAST finds regions of similarity between biological sequences. 2023-06-16
sortmerna public SortMeRNA is a biological sequence analysis tool for filtering, mapping and OTU-picking NGS reads. 2023-06-16
hmmer public Biosequence analysis using profile hidden Markov models 2023-06-16
infernal public Infernal ("INFERence of RNA ALignment") is for searching DNA sequence databases for RNA structure and sequence similarities. 2023-06-16
prodigal public Fast, reliable protein-coding gene prediction for prokaryotic genomes. 2023-06-16

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