biocore
by biocore (Organization)
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To install packages from this channel, use the channel temporarily with conda or add it to your .condarc file for configured ongoing access. Learn more
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Packages
| Name | Latest Version | Summary | Updated | License |
|---|
| unifrac | 0.9.2 | UniFrac | Mar 25, 2025 | BSD License |
| gneiss | 0.4.4 | Compositional Analysis and Visualization toolkit | Mar 25, 2025 | BSD License |
| deblur | 1.1.0 | — | Mar 25, 2025 | BSD license |
| psipred | 4.01 | Accurate protein secondary structure prediction | Mar 25, 2025 | — |
| scikit-bio | 0.5.1 | Data structures, algorithms and educational resources for bioinformatics. | Mar 25, 2025 | BSD License |
| blast-legacy | 2.2.26 | BLAST finds regions of similarity between biological sequences. | Mar 25, 2025 | Public Domain |
| hmmer | 3.1b2 | Biosequence analysis using profile hidden Markov models | Mar 25, 2025 | GPL3 |
| fragment-insertion | 4.3.5 | — | Mar 25, 2025 | — |
| blast-plus | 2.2.31 | BLAST finds regions of similarity between biological sequences. | Mar 25, 2025 | Public Domain |
| biom-format | 2.1.6 | Biological Observation Matrix (BIOM) format | Mar 25, 2025 | BSD License |
| mafft | 7.245 | Multiple alignment program for amino acid or nucleotide sequences | Mar 25, 2025 | BSD |
| sortmerna | 2.0 | SortMeRNA is a biological sequence analysis tool for filtering, mapping and OTU-picking NGS reads. | Mar 25, 2025 | LGPL |
| fasttree | 2.1.8 | FastTree -- inferring approximately-maximum-likelihood trees for large multiple sequence alignments. | Mar 25, 2025 | GPLv2 |
| prodigal | 2.6.2 | Fast, reliable protein-coding gene prediction for prokaryotic genomes. | Mar 25, 2025 | GPL |
| diamond | 0.7.10 | a BLAST-compatible local aligner for mapping protein and translated DNA query sequences against a protein reference database | Mar 25, 2025 | Modified BSD License |
| vsearch | 1.10.0 | VSEARCH, a versatile open source tool for metagenomics | Mar 25, 2025 | GPL/BSD |
| infernal | 1.1.1 | Infernal ("INFERence of RNA ALignment") is for searching DNA sequence databases for RNA structure and sequence similarities. | Mar 25, 2025 | GPL3 |
| emperor | 1.0.0beta4 | Emperor | Mar 25, 2025 | BSD License |
| q2-fragment-insertion | 2018.6.17 | — | Mar 25, 2025 | BSD-3-Clause |
| aragorn | 1.2.36 | ARAGORN detects tRNA, mtRNA, and tmRNA genes. | Mar 25, 2025 | GPL2 |
| transtermhp | 2.09 | — | Mar 25, 2025 | — |
| minced | 0.2.0 | Mining CRISPRs in Environmental Datasets | Mar 25, 2025 | GPL3 |
| swarm | 2.1.6 | swarm, A robust and fast clustering method for amplicon-based studies | Mar 25, 2025 | Affero GPL v3 |
| q2-deblur | 2017.2.3 | — | Mar 25, 2025 | BSD license |
| rdp-tools | 2.0.2 | Metaproject for RDP Tools | Mar 25, 2025 | GPL2 |