vepyr
Rust-powered Ensembl VEP variant annotation for Python
Rust-powered Ensembl VEP variant annotation for Python
To install this package, run one of the following:
vepyr (VEP Yielding Performant Results) is a Python interface to a Rust reimplementation of Ensembl's Variant Effect Predictor, built on Apache Arrow and DataFusion. It converts Ensembl VEP caches to Parquet and annotates variants through a streaming engine, returning Polars LazyFrames or annotated VCF files.
Summary
Rust-powered Ensembl VEP variant annotation for Python
Last Updated
Oct 11, 2026 at 03:40
License
Apache-2.0
Supported Platforms
GitHub Repository
https://github.com/biodatageeks/vepyrDocumentation
https://biodatageeks.org/vepyr/