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vepyr

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Rust-powered Ensembl VEP variant annotation for Python

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::vepyr

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Usage Tracking

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Description

vepyr (VEP Yielding Performant Results) is a Python interface to a Rust reimplementation of Ensembl's Variant Effect Predictor, built on Apache Arrow and DataFusion. It converts Ensembl VEP caches to Parquet and annotates variants through a streaming engine, returning Polars LazyFrames or annotated VCF files.

About

Summary

Rust-powered Ensembl VEP variant annotation for Python

Last Updated

Oct 11, 2026 at 03:40

License

Apache-2.0

Supported Platforms

macOS-arm64
linux-64
macOS-64
linux-aarch64