A set of wrappers for individual components of the tximport package. Functions R packages are hard to call when building workflows outside of R, so this package adds a set of simple wrappers with robust argument parsing. Intermediate steps are currently mainly serialized R objects, but the ultimate objective is to have language-agnostic intermediate formats allowing composite workflows using a variety of software packages.
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Summary
A set of wrappers for individual components of the tximport package. Functions R packages are hard to call when building workflows outside of R, so this package adds a set of simple wrappers with robust argument parsing. Intermediate steps are currently mainly serialized R objects, but the ultimate objective is to have language-agnostic intermediate formats allowing composite workflows using a variety of software packages.
Last Updated
Feb 12, 2019 at 21:15
License
GPL-3
Total Downloads
3.0K
Supported Platforms
GitHub Repository
https://github.com/ebi-gene-expression-group/tximport-scripts